Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_F03
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      53   6e-08
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    38   0.002
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.090
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.84 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   1.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.5  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   4.5  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   7.8  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   7.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 29/87 (33%), Positives = 50/87 (57%)
 Frame = +2

Query: 392 NIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEK 571
           N+I F EL    +  C      + + AE A +GP+   +  LA KY + I+    E++EK
Sbjct: 39  NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94

Query: 572 HSDILWNTAVVISDTGNVIGKHRKNHI 652
            S+I++N+ + I++ GN+ G +RK H+
Sbjct: 95  QSNIIYNSCIYITENGNLGGVYRKVHL 121



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 708 PVFATRYGKIAVNICFGRXHVLNWMMFGXNGXEIVLI 818
           P+F T +GK+ V IC+         +   NG +++++
Sbjct: 136 PIFETSFGKLGVMICWDTAFPEVARIHALNGADLLVV 172


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 34/130 (26%), Positives = 60/130 (46%)
 Frame = +2

Query: 263 RIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCT 442
           R  ++G++Q  +A   D+  N Q   +     K+++ A + G N+I   E++N P+   T
Sbjct: 42  RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--T 91

Query: 443 REKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGN 622
                + E  E  E  P+   L  +A      +    +   E+    L+NTA+V   +G 
Sbjct: 92  GYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGSIP--ERKDGKLYNTAMVFDPSGK 147

Query: 623 VIGKHRKNHI 652
           +I  HRK H+
Sbjct: 148 LIAVHRKIHL 157


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.090
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -3

Query: 504 KVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 325
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 324 LTGR 313
           L GR
Sbjct: 290 LFGR 293


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 476  SAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 586
            SAE+  + +      +   +++VS++LE DEKH D++
Sbjct: 979  SAENTTSFSIFAAQGLTDFLIVVSNLLEMDEKHVDVV 1015


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 572 HSDILWNTAVVISDTGNVIGKHRKNHIPRVGDLTNP 679
           ++D   N A ++    +V  +HR+N +P V ++ NP
Sbjct: 343 NNDYYDNAARILKQMFHVAERHRRNRVPSVQEVLNP 378


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 286  NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 176
            ++S   N++R+G L +G ++VC   GD +   LSC   G+
Sbjct: 885  DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 29/116 (25%), Positives = 48/116 (41%)
 Frame = -2

Query: 457 RLLLPCAEREGHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYS 278
           R LL C +R    P +L   DV      ++DD + F+          T  GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163

Query: 277 YLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 110
           + H+S      V+         E + L   DR       K++  P  N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 95  NNLTGRDLEEFNRIHFGRRNNLEI 166
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 65  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 175
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,099
Number of Sequences: 5004
Number of extensions: 67713
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)