Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_F01
(842 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 34 0.029
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 31 0.20
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 30 0.36
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 1.1
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 28 1.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 1.4
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 27 2.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.4
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 27 4.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 5.8
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 5.8
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.8
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 7.7
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 33.9 bits (74), Expect = 0.029
Identities = 15/62 (24%), Positives = 36/62 (58%)
Frame = +1
Query: 169 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRI 348
EE++E + + D+ D + ME +R+ + +++LF + + + +++ + A LL+ I
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEI 576
Query: 349 KE 354
+E
Sbjct: 577 EE 578
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 31.1 bits (67), Expect = 0.20
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +1
Query: 79 LA*QINR--LELSEWLRRTQRRSRTAPGPXSTEEEDERLKQRPADIDADVREMERRKRVE 252
LA QI + LELS+ R + R A ++EEE+E ++ + +AD E KR
Sbjct: 279 LAGQIEQGMLELSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEAD-DETRENKRQN 337
Query: 253 ALMSSKLFREELERVLDQQMHEGGDA--PLLQ 342
L+ + F ELE + ++ + +A P+L+
Sbjct: 338 RLV--REFISELESSIQKRRKDADEATNPILR 367
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 514 TKQIHQAVHGGQLAAEYLLPLLIPDTFDTSDVVD 413
T + +A HGG L +YL+ + P F SD +D
Sbjct: 484 TNTVWEAAHGGMLGIKYLVAVKYPLFFSHSDYLD 517
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 345 PLQERSVAAL-VHLLVEDPFQFFAEQLRGHESF-DALPAFHFADIGVDVGRTLLQAL 181
P+ +R A L + +V+D FQ E+L G S+ D FHF+DI + G + L
Sbjct: 58 PVSDRKDALLNIPTVVDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCL 113
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 521 SSNQTNPPGGTRRPACSGVSSPPSHTRYL 435
S Q P + P C GV S PSH R L
Sbjct: 273 SPTQATMPNWEKLPGCEGVRSFPSHPRTL 301
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 220 VREMERRKRVEALMSSKLFREELERVLDQQMHEGG 324
+++ + RK+V A+ + KL +E +E+ +M +GG
Sbjct: 484 LKDSQERKKVSAIRAVKLMKEIVEKKQKLEMEKGG 518
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/67 (20%), Positives = 39/67 (58%)
Frame = +1
Query: 106 LSEWLRRTQRRSRTAPGPXSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREE 285
L ++ + ++R ++A E E++ K+R + +++E+E+++++EA + +E+
Sbjct: 84 LGKFQQESEREQKSARKVKRAELEEKLAKRR----EQELQELEKQEKIEAEILESRLQEQ 139
Query: 286 LERVLDQ 306
+ LD+
Sbjct: 140 RKVALDE 146
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 594 GLLPHXVTASSLVKVDMQGVVQDQGTT 674
GL +TASSL+KVD G ++ G T
Sbjct: 121 GLRYGEITASSLIKVDEDGNIKHPGVT 147
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 587 ATSAPAPRPCSDGPLSAPSLRLSSNQTNPPGGTRRP-ACSGVSSPPS 450
A+SAPA + S ++AP++ ++ +PP + P A + +S PS
Sbjct: 139 ASSAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPS 185
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 557 SDGPLSAPSLRLSSNQTNPPGGTRRPACSGVSSPP 453
SD P S SN P GT A SG+ PP
Sbjct: 64 SDLPEEIDSTNAQSNIATPSPGTVAAAISGIQPPP 98
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 569 PRPCSDGPLSAPSLRLSSNQTNPPGGTRRPACSGVSSPPSHTR 441
P P S PL P+ RL + +P S +PP+H R
Sbjct: 42 PAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 121 RRTQRRSRTAPGPXSTEEEDERLKQRPAD--IDADVREMERRKRV 249
RR + R P T+ EDE+ D DA+ RE+ R +R+
Sbjct: 540 RRNRTAQRVVEIPNETQTEDEQDGTNTPDNRADAEERELTRSQRI 584
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 169 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRI 348
E +D+ LK+ I + +++KR++ + +KL +EE+ ++ + E D LL
Sbjct: 71 ELKDQLLKENEGSISS-----KKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSS 125
Query: 349 KEM 357
K +
Sbjct: 126 KNL 128
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +1
Query: 112 EWLRRTQRRSRTAPGPXSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELE 291
E + R + R + EEE ER ++ + D D ++ +++ + REE+
Sbjct: 949 EEMERIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRREEMV 1008
Query: 292 R 294
R
Sbjct: 1009 R 1009
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,634
Number of Sequences: 5004
Number of extensions: 52039
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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