Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_E20
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.89 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.89 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.89 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    23   3.6  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 FMKILYTGASDSNCLCILDSQSQGSFQA 233
           F+K + TG S ++C  ++ +   G F+A
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEFEA 52


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 FMKILYTGASDSNCLCILDSQSQGSFQA 233
           F+K + TG S ++C  ++ +   G F+A
Sbjct: 41  FIKNMITGTSQADCAVLIVAAGTGEFEA 68


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 FMKILYTGASDSNCLCILDSQSQGSFQA 233
           F+K + TG S ++C  ++ +   G F+A
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGTGEFEA 125


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 FMKILYTGASDSNCLCILDSQSQGSFQA 233
           F+K + TG S ++C  ++ +   G F+A
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGIGEFEA 125


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 447 ILVVVCPNSSMYLIMSGSILHNXKSANARGEAVCVL 554
           +L+VVC   +   + S ++ H  KSAN    ++ V+
Sbjct: 5   LLLVVCLGIACQDVTSAAVNHQRKSANNLAHSMKVI 40


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 447 ILVVVCPNSSMYLIMSGSILHNXKSAN 527
           +L+VVC   +   + S ++ H  KSAN
Sbjct: 5   LLLVVCLGIACQDVTSAAVNHQRKSAN 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,115
Number of Sequences: 438
Number of extensions: 3359
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)