Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_D24
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.6
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 1.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 2.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.7
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 6.3
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 26 8.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 8.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.4
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.6
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRYAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 447
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 448 DVTVEGVNVLATPSSS 495
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 528 SSHPPLRSRLHQPDHQ-IPEFHTPTTPDLTSIS 623
+S PP S QP HQ FHTPT P T +S
Sbjct: 120 NSSPP-NSLSSQPKHQEFHLFHTPTIPRTTQLS 151
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 466 VNVLATPSSSRFTIGGLALMHRATLPCDLGYINPIIKSPNSIHQ---PPQT*HPFPSIP* 636
V +++ SSS +G + H ++LP +G + ++ H PPQ+ + S+P
Sbjct: 166 VATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQS--GYSSMPS 223
Query: 637 TPYXKE 654
PY ++
Sbjct: 224 LPYLQQ 229
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 527 IEPPSPAISATSTRSSNPRIPYTNHPRLNIHFHQS 631
++P +P+ S S N + TN P LN HF QS
Sbjct: 348 LDPKNPSASFPRVVSQNNML--TNKPVLNNHFQQS 380
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 524 IRARPPIVKREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
I A P R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 511 GLALMHRATLPCDLGYINPIIKSPNSIHQPPQT*HPFPS 627
GLA+ R+T+P DLG + I +SI P + H P+
Sbjct: 561 GLAVTSRSTVPYDLGDLT--ITVADSIQIPAEVVHLHPT 597
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 289 TKSNSVTVQSLPNVSSIIKGYRYAYL--VNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 462
T +N T S+P S+ + A +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 463 GVNVLATP 486
V +TP
Sbjct: 483 STPVTSTP 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,958
Number of Sequences: 5004
Number of extensions: 59932
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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