Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_D23
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 273 2e-74
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 267 2e-72
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 32 0.095
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.17
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.22
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.67
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 29 0.89
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 3.6
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 4.7
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 4.7
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 4.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 6.3
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3... 26 6.3
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 8.3
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 273 bits (670), Expect = 2e-74
Identities = 132/208 (63%), Positives = 163/208 (78%), Gaps = 2/208 (0%)
Frame = +1
Query: 154 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 333
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 334 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 507
R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 508 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVF 687
Y KMKGDYYRYLAE A GE R + S + Y+ A +IA A++ PTHPIRLGLALNFSVF
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182
Query: 688 YYEIINSPARACHLAKQAFDDAIAELDT 771
YYEI+NSP RAC+LAKQAFD+AI+ELD+
Sbjct: 183 YYEILNSPDRACYLAKQAFDEAISELDS 210
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 267 bits (654), Expect = 2e-72
Identities = 131/209 (62%), Positives = 161/209 (77%), Gaps = 2/209 (0%)
Frame = +1
Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 330
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 331 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 504
WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 505 FYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSV 684
FY KMKGDYYRYLAE GE + S +AY+ A DIA A++ PT P+RLGLALNFSV
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSV 180
Query: 685 FYYEIINSPARACHLAKQAFDDAIAELDT 771
FYYEI++SP ACHLAKQ FD+AI+ELD+
Sbjct: 181 FYYEILDSPESACHLAKQVFDEAISELDS 209
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 32.3 bits (70), Expect = 0.095
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = +1
Query: 133 PLPSSTMSVDKE--ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 306
P+ S TMS E + R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2997 PIMSITMSDSSAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 307 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 438
+R+ + +E+ + EY +E+ L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 154 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 324
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 325 SSWRVIS 345
S+W S
Sbjct: 62 STWATFS 68
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 31.1 bits (67), Expect = 0.22
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +1
Query: 283 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 456
L+S +N A RS + + I + S + ++ + YR VK K L +IC+ +
Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024
Query: 457 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQEAFDIAKAK 633
L L A++ E + + RY+ ++ E R ED+++A + ++ A A
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082
Query: 634 MQPTHP-IRLGLALNFS 681
+QP H I L LA+N S
Sbjct: 1083 LQPMHSIIALRLAINAS 1099
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.67
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 160 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 339
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 340 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 429
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 29.1 bits (62), Expect = 0.89
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +2
Query: 341 FPQLNRKPRVQKESSKWQKNIGLK*KRSSEKSATTFWAYLTNT*FLKLVIQ---KVKCFT 511
F N + R + +QK + + K+ S + A+ F ++ + +KL+ + K CF
Sbjct: 75 FIACNGQTRAVQSRGDYQKTLAIALKKFSLEDASKFIVCVSQSSRIKLITEEEFKQICFN 134
Query: 512 SK*KEITTGTLQKWPQEKPDIPSWRTLRR 598
S E L P+EKP PS+ LRR
Sbjct: 135 SSSPE--RDRLIIVPKEKP-CPSFEDLRR 160
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 454 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 591
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 301 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 417
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.7
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +1
Query: 160 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 330
D ++RA A QA E+ + + +K E+ +L LL V + + R S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322
Query: 331 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 480
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 352 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 528
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 529 YYR-YLAEV 552
+R Y+ E+
Sbjct: 100 SFRDYVGEL 108
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 183 TLHQFFLVDGHRGRWKRTNSLMPDLLKPAVLE 88
TL FL DG RWK + P V+E
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVME 83
>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
L31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -1
Query: 153 HRGRWKRTNSLMPDLLKPAVLE----CKHFFYFISNHLPQSR 40
HR R + + ++ D+L+ A+ E CK F++NH P+S+
Sbjct: 31 HRQRLRAVDEVV-DVLRTALQEKNQSCKRIESFVANHQPESQ 71
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 289 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 423
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,520
Number of Sequences: 5004
Number of extensions: 72927
Number of successful extensions: 246
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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