Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_D22
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    31   0.27 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    28   1.4  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    28   1.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   2.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   4.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    27   4.4  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    26   5.8  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   7.7  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   7.7  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   7.7  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   7.7  

>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 142 PVERGVPQGVCPGPPACG---TSATTGSCGASFGVPSPG*A*YV 264
           P    + +  CPG  ACG   T+ T  SC  + G+  PG + Y+
Sbjct: 216 PTRHDIIRHACPGGGACGGMYTANTMASCAEAMGMTLPGSSSYL 259


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -1

Query: 227  DAPQDPVVADVPQAGGPGQTPCGTPRSTGKRYIVPPCPMHWIDLPS 90
            DAP  PV +  P    P  TP     S+G     PP P    ++PS
Sbjct: 1030 DAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 600 LEAAGSESRPSPSVEGPTSQSERGSST 520
           L   G  SRP+P V+  TS ++ GSST
Sbjct: 217 LRKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 221 PQDPVVADVPQAGGPGQTPCGTPRSTGKRYIVPP 120
           P+  + A  P A GP  +  GT R  G  Y+ PP
Sbjct: 45  PEIKLTASGPFALGPNASSSGTGRPIGSVYVPPP 78


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 124 GTMYRFPVERGVPQGVCPGPPACGTSAT--TGSCGASFGVPS 243
           G+++  P   G        PPA  TS T  TGS G SFG P+
Sbjct: 170 GSLFGKPAATGTTSNA---PPASSTSTTPATGSGGFSFGKPA 208


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 303 SPSPEPRPTCRRRNILRSARGGDPE 229
           SP   P PT  RRN+ R++    PE
Sbjct: 371 SPVEVPAPTFDRRNVSRNSNNNSPE 395


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -1

Query: 221 PQDPVVADVPQAGGPGQTPCGTPRSTGKRYIVPPCPMH 108
           P  PVV +VP    P   P           +VPP P H
Sbjct: 668 PAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPLPPH 705


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 141 EAVHRPTVSDALDRPALEVGADQSAEVCGDAVILQRRSREP 19
           E + +  +    D P L    DQS+E+ G AV     S+ P
Sbjct: 160 ETLKKHVLKKTTDHPILIHSIDQSSEILGAAVWTSSNSKRP 200


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 565 WRRPAL*AGCFQTSGVPIRWRAASNGGLVRS 657
           WRR A   G F       RWRAA+ G L +S
Sbjct: 316 WRREASKFGGFAADVSAERWRAAALGNLSQS 346


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 582 ESRPSPSVEGPTSQSERGSS 523
           ES PSPS   P+S S R  S
Sbjct: 59  ESAPSPSTSSPSSASSRSQS 78


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 191 VEHRLRLGPAGRHSGSPPRAERNMLRRRHVGRGSGEGLPGVCPSGVRRRGTRRH*D 358
           VE  +     G H  S  RAERN L+ +     +G  +    PS  +RR  R H D
Sbjct: 72  VERLINRKENGSHQVSN-RAERNRLQLKRSLERAGINIKFAPPSNKKRRLNRTHYD 126


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = -1

Query: 620  LIGTPDVWKQPAQRAGRRHQSRAQLLKVSAEVPPTIQFEAEVPKTGHPNPDAD--ASDHE 447
            ++  P++W +P ++     + RAQ     ++    +     V  T   N  +D    +H 
Sbjct: 957  MLSVPNIWSRPREKQQEADRQRAQFANPESDHLTLL----NVYTTWKMNRCSDNWCYEHY 1012

Query: 446  VGTHRRRSSRPVKKQGLGFIERHLEP 369
            +     R +  V+KQ +  ++R+  P
Sbjct: 1013 IQARGMRRAEDVRKQLIRLMDRYRHP 1038


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 221 GRHSGSPPRAERNMLRRRHVGRGSGE 298
           G+ S SPPR  RN   +RH  R S +
Sbjct: 21  GQLSTSPPRRWRNCTLQRHGSRASAD 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,172
Number of Sequences: 5004
Number of extensions: 73479
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)