Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_D12
         (1081 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.28 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.49 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 657 PPPPPPPXXXKKKKXXXP 710
           PPPPPPP   KK+K   P
Sbjct: 24  PPPPPPPGYVKKRKNKTP 41



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 657 PPPPPPPXXXKKKKXXXPPP 716
           PPPPPPP   +      PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 657 PPPPPPPXXXKKKKXXXPPP 716
           PPPPPPP      +   PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 645 GXXXPPPPPPPXXXKKKKXXXPPP 716
           G   PPPPPP      +    PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 642 GGXXXPPPPPPPXXXKKKKXXXPPPXXXXG 731
           GG   PPPPPPP     K    P P    G
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAPADNKG 332


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 645 GXXXPPPPPPPXXXKKKKXXXPPPXXXXGGG 737
           G   PPPPPP           PPP     GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 642 GGXXXPPPPPPPXXXKKKKXXXPPPXXXXGG 734
           GG   PPPPP            PPP    GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 657  PPPPPPPXXXKKK 695
            PPPPPPP   +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 657  PPPPPPPXXXKKKK 698
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,372
Number of Sequences: 5004
Number of extensions: 19594
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 567771870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)