Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_D11
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.15
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.15
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 5.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -3
Query: 519 GGGXPPPPPXXGGGXFFFXXXGXGGGGXXPXGGXPPPF 406
G G PPP P GG F G GG GG P F
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 443 PPPXPFXXKKKXPPPXXGGGGGXPPP 520
PPP P PPP G G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 29.5 bits (63), Expect = 0.62
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 762 GXPPPPPPPXXXGXXXXXXXXKXXXPPPPA 673
G PPPPPPP G PPPPA
Sbjct: 760 GPPPPPPPPGVAG-----AGPPPPPPPPPA 784
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 425 PXGXXPPPPXPFXXKKKXPPPXXGGGGGXPPP 520
P PP P PPP G G PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 755 PPPPPPXXXGXXXXXXXXKXXXPPPPPP 672
PPPPPP G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPP-------PPPPPP 783
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 422 PPXGXXPPPPXPFXXKKKXPPPXXGGGGGXPPP 520
PP P P P P P GG PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 755 PPPPPPXXXGXXXXXXXXKXXXPPPPPPXKK 663
PP PPP K PPPPPP ++
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRR 320
Score = 29.9 bits (64), Expect = 0.47
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -1
Query: 755 PPPPPPXXXGXXXXXXXXKXXXPPPPPPXK 666
PPPPPP + PPPPP +
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = -3
Query: 756 PPPPPPP--XXXGXXXXXXXXKXXXPPPP 676
PPPPPPP G + PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Frame = -1
Query: 755 PPPPPPXXXGXXXXXXXX---KXXXPPPPPPXK 666
PPPPPP PPPPPP +
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = -1
Query: 773 KKXXXXPPPPPPXXXGXXXXXXXXKXXXPPPPPP 672
KK PPPP G PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = +2
Query: 440 PPPPXPFXXKKKXPPPXXGG--GGGXPPP 520
PPPP P + + PP G PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +2
Query: 422 PPXGXXPPPPXP-FXXKKKXPPPXXGG 499
PP PPPP P F + PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 413 GGXPPXGXXPPPPXPFXXKKKXPPPXXGG 499
G PP PPPP + K+K P G
Sbjct: 17 GFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 762 GXPPPPPPP 736
G PPPPPPP
Sbjct: 7 GNPPPPPPP 15
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 413 GGXPPXGXXPPPPXPFXXKKKXPPPXXGGG 502
GG PP PPP F P P G
Sbjct: 303 GGLPPPPPPPPPSNDFWKDSNEPAPADNKG 332
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 762 GXPPPPPPP 736
G PPPPPPP
Sbjct: 304 GLPPPPPPP 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,358
Number of Sequences: 5004
Number of extensions: 36135
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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