Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_D07
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.64
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 2.0
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 28 2.0
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.6
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 27 3.4
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.4
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 26 6.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 7.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 515 PPRLEPPRSNYSFAGAPFPPRAKLATPP 432
PP PPRSN + P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 74 SREVMRELSTSDTTFTLNPDTNELATKIEEHTDLLLENTKKMVELRET 217
+REV +E+ + T + + ++ A KIEE D + KK +++ET
Sbjct: 211 TREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKET 258
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Frame = +2
Query: 20 KEAEIELKKEK--SKERNS-GSREVMREL--STSDTTFTLNPD-TNELATK---IEEHTD 172
K+ ++ L E SKE+ + R+ R++ S +D +L+ D +E+A K I+
Sbjct: 538 KQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYT 597
Query: 173 LLLENTKKMVELRETL 220
L E+TKK+ +LRE L
Sbjct: 598 QLRESTKKLSDLREQL 613
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 181 QQQVCMFLDFSRQFIRVWVQCKCC 110
Q+QV D +F R+W QC+ C
Sbjct: 1020 QRQVAQVNDLEVRFARLWTQCQRC 1043
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 131 DTNELATKIEEHTDLLLENTKK 196
+ N+L +++EE DLLL +TK+
Sbjct: 14 ELNQLPSRVEEEEDLLLSSTKQ 35
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 249 YGAPVWCHALTRRNVAALRRPQRAIAVRAIRG 344
YG C LT N++A R Q AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +2
Query: 161 EHTDLLLENTKKMVELRE------TLEG-GGAVDGTIRGSRMVPRPD 280
E +L+L N + + + R T+ G GA++GTI G +P+PD
Sbjct: 22 ETKELMLNNEESLSDWRNYFDEKLTIPGESGALNGTINGYLTLPQPD 68
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 6.0
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -1
Query: 500 PPRSNYSFAGAPFP-------PRAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVS 342
PP SNY+ A P+ P++ A PP S R R+ P + PG +
Sbjct: 98 PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153
Query: 341 SDRPDRDRALRTSQRRDV 288
S RP A R + DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 59 ERNSGSREVMRELSTSDTTFTLNPDTNELATKIEEHTDLLLENTKKMVEL 208
+RNS +++ E ++S + TL+ + ++IEE DL + T + + L
Sbjct: 102 QRNSRIKKLQSEDASSIASSTLSMGEPVVDSEIEEEEDLASQLTSRAISL 151
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 2 TGYQLVKEAEIELKKEKSKERNSG--SREVMRELSTSDTTFTLNPDTN 139
T + L K SK SG ++ VM LST+DTT T + TN
Sbjct: 255 TSHSLTKLPTSSKSLTTSKTTASGHITKGVMEALSTNDTTNTTDDATN 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,172
Number of Sequences: 5004
Number of extensions: 48112
Number of successful extensions: 249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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