Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_D04
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 35 0.098
03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235 34 0.13
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 34 0.17
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.52
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.91
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.7
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.5
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 34.7 bits (76), Expect = 0.098
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 713 EDPXRNTAPXPXRXXPGRVSGKDILEHXHGEXPPXHGXGXAPALDRS 573
ED R+ P P PGR G + E G PP G G PA ++
Sbjct: 1140 EDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRPPTAGAGPPPACPKA 1186
>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
Length = 1293
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 713 EDPXRNTAPXPXRXXPGRVSGKDILEHXHGEXPPXHGXGXAPA 585
ED R+ P P PGR G + E G PP G G PA
Sbjct: 1148 EDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRPPTAGAGPPPA 1190
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 713 EDPXRNTAPXPXRXXPGRVSGKDILEHXHGEXPPXHGXGXAPA 585
ED R+ P P PGR G + E G PP G G PA
Sbjct: 662 EDNPRSAHPHPVSTRPGREQGGEAPEPNGGPMPPTAGAGPLPA 704
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 288 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 124
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.5 bits (68), Expect = 0.91
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 713 EDPXRNTAPXPXRXXPGRVSGKDILEHXHGEXPPXHGXGXAPA 585
ED R+ P P PGR G + E G PP G PA
Sbjct: 812 EDDPRSAHPHPVSTRPGREQGGEAPEPNDGPRPPTTRAGPLPA 854
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 341 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 493
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 186 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 302
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 695 TAPXPXRXXPGRVSGKDILEHXHGEXPPXHGXGXAPA 585
T P P PGR G + E G PP G G PA
Sbjct: 1026 TLPHPVPTWPGREQGGEAPEPNGGPRPPTTGVGPLPA 1062
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 201 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 112
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 73 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 228
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 370 GRGERSPRRWLQPRLAVPRQASTSVPRTP 284
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 315 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 148
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,154,867
Number of Sequences: 37544
Number of extensions: 514296
Number of successful extensions: 1462
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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