Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_D03
(907 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 34 0.82
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 34 0.82
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 34 0.82
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 34 0.82
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 34 0.82
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 34 0.82
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 34 0.82
AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic acet... 33 1.1
AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic acet... 33 1.1
AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine... 33 1.1
AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine... 33 1.1
Y16282-1|CAA76155.1| 494|Homo sapiens nicotinic acetylcholine r... 33 1.4
U62435-1|AAB40113.1| 494|Homo sapiens nicotinic acetylcholine r... 33 1.4
BC014456-1|AAH14456.1| 494|Homo sapiens cholinergic receptor, n... 33 1.4
AB079251-1|BAC06855.1| 494|Homo sapiens Nicotinic acetylcholine... 33 1.4
Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine r... 33 1.9
X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine re... 33 1.9
X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine r... 33 1.9
U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine r... 33 1.9
L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine r... 33 1.9
DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor, n... 33 1.9
BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor, n... 33 1.9
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 32 2.5
AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein. 31 4.3
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 31 5.7
AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine rec... 31 5.7
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 31 7.6
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 31 7.6
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 31 7.6
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 31 7.6
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 31 7.6
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 70 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 108
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.82
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic
acetylcholine receptor subunit4 protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 458
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic
acetylcholine alpha10 subunit protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 458
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 458
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 458
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>Y16282-1|CAA76155.1| 494|Homo sapiens nicotinic acetylcholine
receptor alpha6 subunit precursor protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>U62435-1|AAB40113.1| 494|Homo sapiens nicotinic acetylcholine
receptor alpha6 subunit precursor protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>BC014456-1|AAH14456.1| 494|Homo sapiens cholinergic receptor,
nicotinic, alpha 6 protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>AB079251-1|BAC06855.1| 494|Homo sapiens Nicotinic acetylcholine
receptor alpha 6 protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine
receptor alpha-4 subunit protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine
receptor protein.
Length = 602
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 88 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 126
>U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha 4 subunit protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 4 protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha 4 protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 455
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 32.3 bits (70), Expect = 2.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSW 455
G + + ++R+W PD+VL N T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNDGTYEVSVYTNLIVRSNGSVLW 142
>AK122582-1|BAC56923.1| 1383|Homo sapiens FLJ00269 protein protein.
Length = 1383
Score = 31.5 bits (68), Expect = 4.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 429 HGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPPA 310
HG + SP W Q + + P + P P +CCS P A
Sbjct: 256 HGGRDCSPTCWEQGKCSGPAEQEKRGPSFPKECCSQGPTA 295
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWDKAL 467
G + V +E LW PD+ ++ + L A +S+ G + +DK +
Sbjct: 109 GINKLTVLAENLWLPDIFIVESMDVDQTPSGLTAYISSEGRIKYDKPM 156
>AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine
receptor 3 subunit C protein.
Length = 447
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWDKAL 467
G + V +E LW PD+ ++ + L A +S+ G + +DK +
Sbjct: 109 GINKLTVLAENLWLPDIFIVESMDVDQTPSGLTAYISSEGRIKYDKPM 156
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 30.7 bits (66), Expect = 7.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 30.7 bits (66), Expect = 7.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 342 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 455
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,411,600
Number of Sequences: 237096
Number of extensions: 2373178
Number of successful extensions: 6385
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 5743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6378
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -