Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_D01
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    33   0.30 
07_03_1433 + 26513728-26514135,26525534-26526280                       31   1.2  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   4.8  
12_01_0524 - 4167867-4168445                                           29   6.4  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.4  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.4  
01_05_0490 + 22672241-22674679                                         28   8.4  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 344 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 180
           H P AAA  P VP +    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>07_03_1433 + 26513728-26514135,26525534-26526280
          Length = 384

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
 Frame = +1

Query: 601 VXLXXVGCDGSVQCXAXPG-PWPTVETXXGXVPXVFPAXPPRXXPXXXGPFSPGCXXXWX 777
           V L  +   GSV C    G   P         P + P+ PP   P    P SP       
Sbjct: 6   VLLTLLALVGSVTCQGYTGNASPPTPITYPSPPSLSPSMPPTYPPPSSTPPSPAPVSPSP 65

Query: 778 PGGWPXPLXXXPPXXPXGP 834
           P  +P P    P   P  P
Sbjct: 66  PTTYPPPSTTPPNPAPTSP 84


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
 Frame = +1

Query: 703 FPAXPPRXXPXXXGP-FSPGCXXXWXPGGWPXPLXXXPPXXPXGP 834
           FP  PP   P    P   P       P G P P    PP  P GP
Sbjct: 18  FPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGP 62


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -2

Query: 341 QPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 162
           QPS+AA  P     +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 161 CEERVDHEGQ*C 126
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 77  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 217
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 426 GRGERSPRRWLQPRLAVPRQASTSVPRTP 340
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = +1

Query: 652 PGPWPTVETXXGXVPXVFPAXPPRXXPXXXGPFSPGCXXXWXPGGWPXPLXXXPPXXPXG 831
           P P  T  +     P   PA PP   P    PF P     +     P P    PP  P  
Sbjct: 644 PPPPTTRRSRKPPQPPSRPAPPPPPPPQQQPPFYPRRAVVYYTYPLPPPSPPLPPPPPPP 703

Query: 832 P 834
           P
Sbjct: 704 P 704


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,035,379
Number of Sequences: 37544
Number of extensions: 503742
Number of successful extensions: 1341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)