Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_C23
(887 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6). pr... 35 0.34
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 4.2
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.2
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 4.2
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 4.2
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 4.2
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 4.2
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 4.2
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 4.2
AK127460-1|BAC86989.1| 164|Homo sapiens protein ( Homo sapiens ... 30 9.8
>AK128134-1|BAC87289.1| 377|Homo sapiens member 6 (SLC12A6).
protein.
Length = 377
Score = 35.1 bits (77), Expect = 0.34
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +2
Query: 467 SQCAGHPFILSHYYWRSRPYASSHPPLRSRATSTRSSNPRF--HTPTTPDLTSISINPLT 640
S GH SH + +A SHPP T + P + HT + P I PLT
Sbjct: 135 SHTPGHTHSCSHLI-HTHSHAHSHPPNAPTHTHAHTLRPTYCPHTRSHPMHLLTLIRPLT 193
Query: 641 PY*KEFAPGXKPPLSSEAH 697
P PG + + AH
Sbjct: 194 PAHTHLTPGSHTHVHTPAH 212
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AK127460-1|BAC86989.1| 164|Homo sapiens protein ( Homo sapiens
cDNA FLJ45552 fis, clone BRTHA2038279. ).
Length = 164
Score = 30.3 bits (65), Expect = 9.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 568 PIIKSPIPYTNHPRLNIHFHQSPDAVLKGVRAGVXASVVIRGSSAYLTPSSLGMAKGV 741
P SP+P+T R ++ S D VL + ++R +AYL LG + V
Sbjct: 61 PGTSSPVPFTGIQRSGVYCGASEDRVLGSASIKDDSGCLLRTPAAYLVVHLLGAVEDV 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,993,611
Number of Sequences: 237096
Number of extensions: 2479340
Number of successful extensions: 5956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5941
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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