Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_C22
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          247   1e-65
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   247   1e-65
10_02_0199 + 6668902-6669293,6669825-6669882                           34   0.17 
03_05_0366 - 23505755-23506441                                         31   1.2  
04_01_0588 + 7657510-7657992,7658397-7658843                           29   6.4  
02_04_0457 + 23093020-23093343,23093798-23093806                       29   6.4  
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657           28   8.4  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  247 bits (604), Expect = 1e-65
 Identities = 123/237 (51%), Positives = 148/237 (62%), Gaps = 1/237 (0%)
 Frame = +3

Query: 150 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVAR 329
           T   ++  L  VF+AP+RPD+V  VH  +S N RQPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20  TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79

Query: 330 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXX 509
           IPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH                       
Sbjct: 80  IPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPS 139

Query: 510 XXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGK 689
              ARGH IE +PELPLV++D  + I KT QA+  L+++ A++D  K   S  +R GKGK
Sbjct: 140 LVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGK 199

Query: 690 MRNRRRIQRKGXLIIFNKD-QGXXRAFRKSPXXXXXXXXXXXXXXXAPGGHLGRFGI 857
           MRNRR I RKG LI++  +     +AFR  P               APGGHLGRF I
Sbjct: 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVI 256


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  247 bits (604), Expect = 1e-65
 Identities = 124/241 (51%), Positives = 147/241 (60%), Gaps = 1/241 (0%)
 Frame = +3

Query: 138 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGR 317
           E       A   +P V +APIRPD+V   H  +S N RQPY VS+ AGHQTSAESWGTGR
Sbjct: 15  EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74

Query: 318 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 497
           AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH                   
Sbjct: 75  AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAAT 134

Query: 498 XXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRA 677
                  ARGH IE +PE PLVV+D ++ I KT Q++  L+++ A++D  K   S  +RA
Sbjct: 135 AVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRA 194

Query: 678 GKGKMRNRRRIQRKGXLIIFNKD-QGXXRAFRKSPXXXXXXXXXXXXXXXAPGGHLGRFG 854
           GKGKMRNRR I RKG LI++  +     +AFR  P               APGGHLGRF 
Sbjct: 195 GKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFV 254

Query: 855 I 857
           I
Sbjct: 255 I 255


>10_02_0199 + 6668902-6669293,6669825-6669882
          Length = 149

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 294 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 404
           A+SW TGRA A + R R GG  R    A  N   G R
Sbjct: 36  AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 180 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 356
           ++  AP   D   +V  S +   R  P C S E   + +AES  TG A  R  R+  G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167

Query: 357 HRSGQGA 377
           + + + A
Sbjct: 168 NDNDEEA 174


>04_01_0588 + 7657510-7657992,7658397-7658843
          Length = 309

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
 Frame = +3

Query: 216 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 386
           +D+    ++ SR    +   +  ++S+  W  G    R+  +    GGG  R      G 
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260

Query: 387 MCRGGRMFAPTKPWRRW 437
                    P  PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277


>02_04_0457 + 23093020-23093343,23093798-23093806
          Length = 110

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 383
           G + S   W  G A A    VRGGG  RSG G  G
Sbjct: 76  GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109


>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
          Length = 390

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -1

Query: 372 PDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 271
           P   + +HHHGH     +  +     H  G  PP
Sbjct: 33  PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,384,345
Number of Sequences: 37544
Number of extensions: 588747
Number of successful extensions: 1845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)