Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_C14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -3

Query: 609 PPPPPXXXXXXXXPPPPXXXXXXXXXXXXGGXXXPPPPPXXXGGXXP 469
           PPPPP         P P            GG   PPPPP   G   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 609 PPPPPXXXXXXXXPPPP 559
           PPPPP        PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 609 PPPPPXXXXXXXXPPPP 559
           PPPPP        PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 609 PPPPPXXXXXXXXPPPP 559
           PPPPP        PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -1

Query: 608 PPPPPXXXXXXXXPPPXXXXXXXXXXXXGGGXXAPPPPXXXGGGS 474
           P PPP        PPP            G     PPPP    GGS
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGA----GPPPPPPPPPAVSAGGS 790


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 609 PPPPPXXXXXXXXPPPP 559
           PPPPP        PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 609 PPPPPXXXXXXXXPPPP 559
           PPPPP        PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,733
Number of Sequences: 5004
Number of extensions: 26886
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)