Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_C13
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   1.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   6.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.0  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   6.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   8.0  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   8.0  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    26   8.0  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 59  VEPFVPISSRGNAFPAPXTSQPESR----KAPPSPRYYS 163
           V P +P+S   +  P   T+ P S+     APP+P Y+S
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFPSSKPQIVNAPPAPSYFS 344


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 307 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 423
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 476 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 586
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 124 GVPQGSALSPLLFSLYINDI 183
           G PQGS +SP+L ++Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +2

Query: 122 PESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 235
           P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 425 PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 537 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 433
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 65  VRQVVSYDEHEPVWHSHV 12
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 43/172 (25%), Positives = 64/172 (37%), Gaps = 7/172 (4%)
 Frame = +2

Query: 74  PISSRGNAFPAPXTSQPES-RKAPPSPRYYSVCI-STIYP-----GLRRPIWRSSPMTPP 232
           P S+   + P P TS   +   + P P   + C  ST  P      L  PI  + P T  
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256

Query: 233 STTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSRLG 412
           S+T +               P  + S S  +T T       S+  V    P  ++ S   
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTTPVTPTVPPTSTSS--- 312

Query: 413 ASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS 568
            + TPPPP + S   TS    P  S    + +++      T+     VPP+S
Sbjct: 313 -TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +1

Query: 184 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 354
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 355 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 444
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 124 GVPQGSALSPLLFSLYINDI 183
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 355 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 525
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 526 RPHIKTVRDR 555
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 62  EPFVPISSRGNAFPAPXTSQPE 127
           +PF PIS +  A+  P T  PE
Sbjct: 116 DPFAPISVKSGAWKKPYTKVPE 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,413,236
Number of Sequences: 5004
Number of extensions: 73760
Number of successful extensions: 239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)