Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_C05
(925 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 27 0.18
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 1.7
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.9
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 5.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 5.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 5.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 6.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 28 EKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 28 EKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 28 EKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 28 EKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 28 EKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 28 EKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 96 EKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 242 ESXSTVXIXADLQMNWIDKRLSWNAXEWG 328
E + A L++ W+D L WN E+G
Sbjct: 96 EKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 24.2 bits (50), Expect = 1.7
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +2
Query: 143 MIDSLLATYDRDXPP----DSXIVVXLXLDMRHAXXRESXSTVXIX-ADLQMNWIDKRLS 307
+ D LL+ Y+R P + V L L + + V ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 308 WNAXEWG 328
WN E+G
Sbjct: 97 WNPEEYG 103
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 3.9
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +2
Query: 275 LQMNWIDKRLSWNAXEWG 328
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 5.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 275 LQMNWIDKRLSWNAXEWG 328
++ W D +L WN ++G
Sbjct: 73 VEQEWNDYKLKWNPDDYG 90
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 5.2
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +2
Query: 143 MIDSLLATYDRDXPPDSX----IVVXLXLDMRHAXXRESXSTVXIX-ADLQMNWIDKRLS 307
+ D LL+ Y+R P S +VV L L + + L+ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKFQ 83
Query: 308 WNAXEWG 328
W+ E+G
Sbjct: 84 WDPAEYG 90
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 5.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 275 LQMNWIDKRLSWNAXEWG 328
L++ W D + WN ++G
Sbjct: 76 LKLEWNDVNMRWNVSDYG 93
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 275 LQMNWIDKRLSWNAXEWG 328
++ +W D +L W E+G
Sbjct: 81 VEQSWYDYKLRWEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 275 LQMNWIDKRLSWNAXEWG 328
++ +W D +L W E+G
Sbjct: 81 VEQSWYDYKLRWEPKEYG 98
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 6.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 287 WIDKRLSWNAXEW 325
W D L WNA E+
Sbjct: 62 WTDHHLKWNASEF 74
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,770
Number of Sequences: 438
Number of extensions: 1921
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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