Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_C03
(867 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 35 0.013
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.070
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.28
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 28 1.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.0
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 2.0
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 4.6
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 8.0
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 8.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 8.0
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 35.1 bits (77), Expect = 0.013
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 395 TSA*SSVRPTSTPMSAK-WNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCXGSRR 571
TSA S+ T+TP S+ ++ S+S S P S S + SS S +++ S
Sbjct: 137 TSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISS 196
Query: 572 WSAGDCTPEASGVLAAFCRSTTSEVSKVSGMXRGXXYS 685
A + ++ ++ F STTS S +G Y+
Sbjct: 197 ADAKTVSASSNSTISGFSTSTTSASSSAAGNSSSSSYT 234
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.7 bits (71), Expect = 0.070
Identities = 15/62 (24%), Positives = 35/62 (56%)
Frame = +1
Query: 385 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLXRI 564
EE++E + + D+ D + ME +R+ + +++LF + + + +++ + A LL I
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEI 576
Query: 565 KE 570
+E
Sbjct: 577 EE 578
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.28
Identities = 26/88 (29%), Positives = 44/88 (50%)
Frame = +2
Query: 395 TSA*SSVRPTSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCXGSRRW 574
+S +SV PTS+ ++ W+ S+S++ + SA GSSTS A+ S S
Sbjct: 939 SSVAASVTPTSSSSASSWS--SSSEVDPSTAASA---TGSSTSSIATASVSGSSTSSVAT 993
Query: 575 SAGDCTPEASGVLAAFCRSTTSEVSKVS 658
++ + +S A+ S+TS V+ S
Sbjct: 994 ASATDSSTSSIAAASVTGSSTSSVATAS 1021
Score = 25.8 bits (54), Expect = 8.0
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +2
Query: 407 SSVRP--TSTPMSAKWNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCXGSRRWSA 580
SSV P TST GS + + S +A+ + + TS + T S + WS+
Sbjct: 899 SSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSS 958
Query: 581 GDCTPEASGVLAAFCRSTTSEVSKVSG 661
++ A +++ + VSG
Sbjct: 959 SSEVDPSTAASATGSSTSSIATASVSG 985
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 436 VREMERRKRVEALMSSKLFREELERVLDQQMHEGG 540
+++ + RK+V A+ + KL +E +E+ +M +GG
Sbjct: 484 LKDSQERKKVSAIRAVKLMKEIVEKKQKLEMEKGG 518
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -3
Query: 418 PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNP 278
P + SSA LP + S SSLS S P LSS T S P
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQP 187
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 561 PXQERSVAAL-VHLLVEDPFQFFAEQLRGHESF-DALPAFHFADIGVDVGRTLLQAL 397
P +R A L + +V+D FQ E+L G S+ D FHF+DI + G + L
Sbjct: 58 PVSDRKDALLNIPTVVDDEFQH-TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCL 113
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 2.6
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 346 SETIPNGTGPLSTEEEDERLKQ--RPADIDADVREMERRKRVEALMSSKLFREELERVLD 519
S T+P G G S + E + P D D+ + E L +SKL E + L
Sbjct: 78 SPTLPPGFGMASDDSEASLAENDLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLL 137
Query: 520 QQMHEGGDAPLLXRIKEMVGG 582
++ +P+L K+++ G
Sbjct: 138 EEGEVAVSSPILLDSKDVIMG 158
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 4.6
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +1
Query: 259 PEGLVLPDY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 438
P V P+Y P + + + G +TD T P G GP T + PA I
Sbjct: 294 PSITVPPNYIPNTAMMGPSYSSFG--DTDPRTYPAGMGPNPTAARNGFYPPTPAQIHQLK 351
Query: 439 REMERRKRVEALMS 480
+ + +R MS
Sbjct: 352 AQQQHLQRQSKQMS 365
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/66 (21%), Positives = 36/66 (54%)
Frame = +1
Query: 325 VGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREEL 504
+G + +SE + E +E+L +R + +++E+E+++++EA + +E+
Sbjct: 84 LGKFQQESEREQKSARKVKRAELEEKLAKRR---EQELQELEKQEKIEAEILESRLQEQR 140
Query: 505 ERVLDQ 522
+ LD+
Sbjct: 141 KVALDE 146
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = -3
Query: 418 PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVARVLQESCTV 245
P AS R+PP + + ++P P I S SNP + S TV
Sbjct: 937 PPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTV 994
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 385 EEEDERLKQRPADIDADVREMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLXRI 564
E +D+ LK+ I + +++KR++ + +KL +EE+ ++ + E D LL
Sbjct: 71 ELKDQLLKENEGSISS-----KKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSS 125
Query: 565 KEM 573
K +
Sbjct: 126 KNL 128
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 376 LSTEEEDERLKQRPADIDADVREMER-----RKRVEALMSSKLFREELERVLD 519
L EE ++ L ++ D+D+ + ++ RK EAL SKL + L V+D
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVID 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,769
Number of Sequences: 5004
Number of extensions: 57736
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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