Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_C02
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    48   1e-05
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    46   4e-05
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   0.003
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    38   0.010
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    34   0.12 

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
 Frame = +1

Query: 115  LLFSLYIND--IPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 288
            LLF L+IN+  I  +P  +++ FADD  I+++    +++   + I V+    W +   + 
Sbjct: 890  LLFILFINNLLIDLAPTINISCFADDVKIFHT--DPTIIQNSIDIIVS----WSKLNELP 943

Query: 289  INPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 468
            + PTKSA               + L +R  N S     ++ G PI   S V+ LG+  D 
Sbjct: 944  LAPTKSAL--------------LALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDC 985

Query: 469  GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 639
             + F  HI  V   +   + R   +L + S  S +    LYKT + P+M Y S V+A
Sbjct: 986  KLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 2/175 (1%)
 Frame = +1

Query: 115 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 288
           LLF +Y+NDI       +A   FADDT +Y S  K       LQ A+  +  W +  ++ 
Sbjct: 86  LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144

Query: 289 INPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 468
           +N +K              T  + +  RR +        L G PI   +  + LG  +  
Sbjct: 145 LNQSK--------------TVHVTVGKRRIDFK----YHLDGYPIERKAITRDLGFLISE 186

Query: 469 GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVV 633
            + F  H +   + A F L  ++    + +K   +  + LYKT IRP + Y +VV
Sbjct: 187 KLDFSDHWRKCINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRPRLEYGTVV 238


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 29/125 (23%), Positives = 56/125 (44%)
 Frame = +1

Query: 118 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 297
           LF+ Y+ D+P   +T L  +ADD +I    +K+     ++Q+ +  + ++ ++  + I+ 
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602

Query: 298 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMT 477
            KS   +F         S  P   +         I     PIP ++  K LG+TL+    
Sbjct: 603 EKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVINAPKLLGITLNTMTG 648

Query: 478 FRPHI 492
            + H+
Sbjct: 649 TKDHV 653


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = +1

Query: 418 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 597
           PI   +  + LG+  D  +TF+PHIK +    +  L R   +L S   L       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 598 CIRPVMTYASVVFA 639
            I P++ Y S V++
Sbjct: 245 YILPLIEYGSAVYS 258


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +1

Query: 406 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 585
           L G PI   +  + LG  +   + F  H K   + A F L  ++    + +K  +   + 
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192

Query: 586 LYKTCIRPVMTYASVV 633
           LYKT IRP + Y +VV
Sbjct: 193 LYKTFIRPRLEYGTVV 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,365
Number of Sequences: 27780
Number of extensions: 405533
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)