Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_C01
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   207   9e-56
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   207   9e-56

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  207 bits (506), Expect = 9e-56
 Identities = 95/111 (85%), Positives = 104/111 (93%)
 Frame = +2

Query: 257 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 436
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 437 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQF 589
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 54.8 bits (126), Expect = 1e-09
 Identities = 27/46 (58%), Positives = 28/46 (60%)
 Frame = +3

Query: 594 RYFXXXXXXXXXXXXTSLCFVYPLEFARTRLAADVGKGXGXR*ILG 731
           RYF            TSLCFVYPL+FARTRLAADVGK  G R   G
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTG 158



 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 25/63 (39%), Positives = 28/63 (44%)
 Frame = +1

Query: 721 EFSGLGNWXSXNFKFXRADRSVKRFGVSVPGIIIYRGXXLXVXXNXPGXAARPXKTPLXX 900
           EF+GLGN  +  FK        + FGVSV GIIIYR           G    P KTP   
Sbjct: 155 EFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLI 214

Query: 901 XXG 909
             G
Sbjct: 215 SWG 217



 Score = 29.9 bits (64), Expect = 0.034
 Identities = 27/108 (25%), Positives = 46/108 (42%)
 Frame = +2

Query: 284 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 463
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 464 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWALLRW 607
              +RG   +V      +A  F F D  + +      KKT F  L+ W
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPF--LISW 216



 Score = 27.5 bits (58), Expect = 0.18
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 344 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 502
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  207 bits (506), Expect = 9e-56
 Identities = 95/111 (85%), Positives = 104/111 (93%)
 Frame = +2

Query: 257 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 436
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 437 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQF 589
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 54.8 bits (126), Expect = 1e-09
 Identities = 27/46 (58%), Positives = 28/46 (60%)
 Frame = +3

Query: 594 RYFXXXXXXXXXXXXTSLCFVYPLEFARTRLAADVGKGXGXR*ILG 731
           RYF            TSLCFVYPL+FARTRLAADVGK  G R   G
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTG 158



 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 25/63 (39%), Positives = 28/63 (44%)
 Frame = +1

Query: 721 EFSGLGNWXSXNFKFXRADRSVKRFGVSVPGIIIYRGXXLXVXXNXPGXAARPXKTPLXX 900
           EF+GLGN  +  FK        + FGVSV GIIIYR           G    P KTP   
Sbjct: 155 EFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLI 214

Query: 901 XXG 909
             G
Sbjct: 215 SWG 217



 Score = 29.9 bits (64), Expect = 0.034
 Identities = 27/108 (25%), Positives = 46/108 (42%)
 Frame = +2

Query: 284 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 463
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 464 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWALLRW 607
              +RG   +V      +A  F F D  + +      KKT F  L+ W
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPF--LISW 216



 Score = 27.5 bits (58), Expect = 0.18
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 344 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 502
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,083
Number of Sequences: 438
Number of extensions: 4838
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)