Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_B23
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 282 3e-76
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 279 3e-75
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 30 2.2
06_03_0543 + 21967787-21970261 30 2.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 5.0
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.6
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.6
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 6.6
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 8.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 282 bits (691), Expect = 3e-76
Identities = 130/223 (58%), Positives = 167/223 (74%)
Frame = +1
Query: 94 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWE 273
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL + WE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 274 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 453
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 454 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 633
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 634 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDLKK*KDEQQPGTA 762
LLAR VL++RG + +WDV+VDLFFYRD ++ K++++ A
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPA 223
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 279 bits (683), Expect = 3e-75
Identities = 127/213 (59%), Positives = 162/213 (76%)
Frame = +1
Query: 127 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVA 306
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL + WEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 307 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 486
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 487 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 666
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 667 VLPRDQRWDVVVDLFFYRDLKK*KDEQQPGTAV 765
+ +WDV+VDLFFYRD ++ K++++ A+
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQEEEEAAL 224
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 739 PFTSSGHGRRTNQPQHPSAGHGEAHHEASTLH 644
PF HG + H GHG +HH +H
Sbjct: 64 PFAPRAHGDHHHGHHHHHHGHGHSHHHGPEVH 95
>06_03_0543 + 21967787-21970261
Length = 824
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Frame = +1
Query: 622 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF---FYRDL----KK*KDEQQPGTA 762
L W++L RE +LRGV P + ++++ + F YR+L +K KDE G +
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYRELVLATRKFKDELGRGAS 525
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 201 PDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSH 308
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 194 TFSAPRWVVAASILVTSSSLRASTSNP 114
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 372 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 479
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 147 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSHREPR*C 326
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 327 VRHLITALRSACCTEVCR 380
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 46 VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 216
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,244,179
Number of Sequences: 37544
Number of extensions: 630980
Number of successful extensions: 1652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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