Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_B18
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    28   2.0  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   8.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   8.2  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   8.2  

>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 341 NAPPSSRSLERTSRCRASWLRCSAATRPGRRC 436
           N  P  R+     RCR   +RC+ +  PG+ C
Sbjct: 5   NTGPRRRTAVACDRCRRRKIRCTGSDIPGQPC 36


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 257 VGSLPAILCKYRPKQP*PVSICVSRKVRHPRSRP 156
           + S P  L K+R + P    IC  RKV+  R +P
Sbjct: 1   MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 271 HCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVV 396
           HC     E+    T + C G   Q+    A  GED  LP VV
Sbjct: 14  HCPGPSSENAG--TASACEGCPNQQICASAPRGEDPDLPLVV 53


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 627 LTPSGRPLTFXRGEAANPTGPGRTGVFPPPAPGSTATD 514
           LTP+G   T      ++PT P      PP +   T  D
Sbjct: 74  LTPNGDSNTLTPDTFSDPTAPSSAQSVPPTSSAETTAD 111


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 576 PTGPGRTGVFPPPAPG 529
           P GPG   + PPP PG
Sbjct: 280 PMGPGGAPLVPPPPPG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,864
Number of Sequences: 5004
Number of extensions: 33969
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)