Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_B18
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ060036-1|AAY43130.1|  900|Homo sapiens polymerase (DNA directe...    37   0.084
AY136549-1|AAN52116.1|  900|Homo sapiens DNA polymerase N protein.     37   0.084
AL158068-2|CAM20461.1|  900|Homo sapiens polymerase (DNA directe...    37   0.084
AL136360-1|CAM16854.1|  900|Homo sapiens polymerase (DNA directe...    37   0.084
DQ395348-1|ABD61734.1|   51|Homo sapiens striated muscle prefere...    31   5.5  
AL512764-1|CAC21681.1|  793|Homo sapiens hypothetical protein pr...    31   7.3  
AF095725-1|AAF03263.1|  297|Homo sapiens olfactory receptor 17-1...    30   9.7  

>DQ060036-1|AAY43130.1|  900|Homo sapiens polymerase (DNA directed)
           nu protein.
          Length = 900

 Score = 37.1 bits (82), Expect = 0.084
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +1

Query: 166 RGCLTFRLTQMLTGHGC-----FGRYLHKIAGREPTA--QCHHCADRDEEDTAEHTLARC 324
           RG +     Q   GHGC      G  L      +P    Q  H A  D+E  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 325 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDF 444
             F   +     +        R+V    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>AY136549-1|AAN52116.1|  900|Homo sapiens DNA polymerase N protein.
          Length = 900

 Score = 37.1 bits (82), Expect = 0.084
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +1

Query: 166 RGCLTFRLTQMLTGHGC-----FGRYLHKIAGREPTA--QCHHCADRDEEDTAEHTLARC 324
           RG +     Q   GHGC      G  L      +P    Q  H A  D+E  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 325 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDF 444
             F   +     +        R+V    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>AL158068-2|CAM20461.1|  900|Homo sapiens polymerase (DNA directed)
           nu protein.
          Length = 900

 Score = 37.1 bits (82), Expect = 0.084
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +1

Query: 166 RGCLTFRLTQMLTGHGC-----FGRYLHKIAGREPTA--QCHHCADRDEEDTAEHTLARC 324
           RG +     Q   GHGC      G  L      +P    Q  H A  D+E  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 325 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDF 444
             F   +     +        R+V    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>AL136360-1|CAM16854.1|  900|Homo sapiens polymerase (DNA directed)
           nu protein.
          Length = 900

 Score = 37.1 bits (82), Expect = 0.084
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
 Frame = +1

Query: 166 RGCLTFRLTQMLTGHGC-----FGRYLHKIAGREPTA--QCHHCADRDEEDTAEHTLARC 324
           RG +     Q   GHGC      G  L      +P    Q  H A  D+E  A    AR 
Sbjct: 245 RGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQFARN 304

Query: 325 SGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDF 444
             F   +     +        R+V    G+D SWK + DF
Sbjct: 305 VLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADF 344


>DQ395348-1|ABD61734.1|   51|Homo sapiens striated muscle
           preferentially expressed protein protein.
          Length = 51

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 371 RTSRCRASWLRCSAATRPGRRCS 439
           RT  C A+W R S A  P RRCS
Sbjct: 23  RTPACTAAWPRTSGAGPPARRCS 45


>AL512764-1|CAC21681.1|  793|Homo sapiens hypothetical protein
           protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 38/110 (34%), Positives = 41/110 (37%), Gaps = 2/110 (1%)
 Frame = +3

Query: 243 RKGTDGAVPPLRGPRRGRHSGTHAGALLWIRRATRRPR-RGHWRGPLAAARRGYDARQRR 419
           R+   GA PPLRG         HAG L   R A  R R RGH R  + A      A  RR
Sbjct: 660 RRVLGGAGPPLRGAH------WHAGLL---RHALHRLRLRGHCRAAVPAP-----AAHRR 705

Query: 420 VLEGDARLLRVHHIXXXXXXXXXXXLF-PFRTDPSPSSRGPEAGIRPYVP 566
                AR    HH            L  P    P P   GP A  RP+ P
Sbjct: 706 RAGRPARTQARHHRALPGPLAPVHPLRQPGGVLPHPGLLGPRAETRPHRP 755


>AF095725-1|AAF03263.1|  297|Homo sapiens olfactory receptor 17-1
           protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 386 RASWLRCSAATRPGRRCSTSASPP 457
           RASW RCSA  RP  R      PP
Sbjct: 176 RASWSRCSACARPAPRLLHLRGPP 199


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,545,210
Number of Sequences: 237096
Number of extensions: 1795793
Number of successful extensions: 8727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8713
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)