Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_B16
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              37   3e-04
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 21/37 (56%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 769 EMATAXSXSSLEKFTNFRRSGXX-IGNXKFRCPXALF 876
           EMATA S SSLEK           IGN +FRCP ALF
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALF 37


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +2

Query: 602 TP-PRHPASGLGRSRPHRLPHEDPHRARLLVHYH 700
           TP P H   G G S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 666  ILTERGYSFTTTAERGNRS*HQGEXVLR 749
            +L ++G    TTA   N+   QG+ V++
Sbjct: 1132 LLAQKGLKLATTASHANQLNRQGKQVIQ 1159


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 372  LRVAPEEHPVLLTEAPLNPKANREKM 449
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,854
Number of Sequences: 438
Number of extensions: 5973
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)