Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_B15
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 176 3e-45
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 105 6e-24
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 63 4e-11
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 62 8e-11
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 54 2e-08
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 54 2e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 51 2e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 3e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 3e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 5e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 5e-06
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 46 9e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 7e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 9e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 42 9e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 41 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 41 3e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 5e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.002
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.023
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.023
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.053
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.070
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.28
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.49
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.49
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.49
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.86
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 27 2.6
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.5
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 3.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 3.5
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 4.6
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 26 6.1
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.1
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 8.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 8.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 176 bits (429), Expect = 3e-45
Identities = 78/171 (45%), Positives = 121/171 (70%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P VN V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 300 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 479
+ H LDG+ IDPK PR Q+ K+F+GG+P + TE + R FF ++G+V+
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKT-----AKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 480 EVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFINLNGKQVEIKRAXPR 632
+ +M D++ + RGFGF+++E+E +VE + +I ++GK VE+KRA P+
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 67.7 bits (158), Expect = 2e-12
Identities = 27/90 (30%), Positives = 53/90 (58%)
Frame = +3
Query: 93 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
R P + ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 273 ADPSLVNLVLQNGPHQLDGRTIDPKPCNPR 362
+ S V + + G+ ++ K P+
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 66.9 bits (156), Expect = 4e-12
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +3
Query: 399 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERV-TQ 575
K+F+GGL T+ LR +F ++G+V++ +M D +SRGFGFL+F++ V V ++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 576 EHFINLNGKQVEIKRAXPRDGSGK 647
EH +L+GK ++ KRA PR+ K
Sbjct: 224 EH--HLDGKIIDPKRAIPREEQEK 245
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 105 bits (253), Expect = 6e-24
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 282 SLVN-LVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRGG-----GYPK--VFLGGLP 422
V NG ++DGR + +P+P NP+ + + G P VF+G L
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 423 SNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFINLNGK 602
N TE DL FG G + + + D + + +GFG+++F D S ++ + + + G+
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGR 434
Query: 603 QVEIKRAXPRDGSG 644
+ + PR G G
Sbjct: 435 PCRLDFSTPRTGGG 448
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 63.3 bits (147), Expect = 4e-11
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Frame = +3
Query: 99 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+P + G +F+ L + L FS +G+++ C V + E G ++G+GFV F
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDS 217
Query: 279 PSLVNLVLQ--NGPHQLDGRTIDPKPCNPRTLQKPKRG--GGYPKVFLGGLPSNVTETDL 446
N ++ NG D + + R Q + V++ L + +TE +
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEF 277
Query: 447 RVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFED-EISVERVTQEHFINLNGKQVEIKRA 623
FG++G++ + ++ DQ K RGFGF+++ + E + + V + + GK++ + RA
Sbjct: 278 SDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336
Score = 44.8 bits (101), Expect = 2e-05
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 16/184 (8%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQN- 308
+++ L E +++ F ++GE+ ++K+ ++ + RGFGFV +A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 309 ------GPHQLDGRTIDP--------KPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL 446
G GR K L+K + G +F+ L V + L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQDEVDDERL 380
Query: 447 RVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSF-EDEISVERVTQEHFINLNGKQVEIKRA 623
+ F +G + IM D E+ KS+GFGF+ + E + + VT+ + L GK + + A
Sbjct: 381 KAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 624 XPRD 635
++
Sbjct: 440 QRKE 443
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 62.5 bits (145), Expect = 8e-11
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA---DPSLVNLVL 302
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+ D L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 303 QNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETD-L 446
+N +L GR + PR ++K R P++ + LP ++ + L
Sbjct: 67 KN--KKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 447 RVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFINLNGKQVE 611
F ++GKV E+ I + + GF F+ +D + +E +LNG +++
Sbjct: 125 EPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKD----RKAAEEAMNSLNGTEID 174
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 54.4 bits (125), Expect = 2e-08
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Frame = +3
Query: 156 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 335
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 336 I--------DPKPCNP-RTLQKPKRGGGYPK-----VFLGGLPSNVTETDLRVFFGRYGK 473
I +P P TL K K +F+G L T+ DL+ FG+ G+
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQ 253
Query: 474 VMEVVIMYDQEKKKSRGFGFLSFED 548
+ V +M ++ K +GFGF+ F D
Sbjct: 254 IRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 45.6 bits (103), Expect = 9e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 54.4 bits (125), Expect = 2e-08
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 4/148 (2%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
+K L++G L ++ +Q+ ++ G+ + +++N +G + G+ FV FA P +
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 300 LQNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL-RVFFGRY 467
+ + G K +K +F+G L NV E D+ +F RY
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 468 GKVMEVVIMYDQEKKKSRGFGFLSFEDE 551
IM D + SRG+GF+ F DE
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDE 238
Score = 33.5 bits (73), Expect = 0.040
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
P D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 50.8 bits (116), Expect = 2e-07
Identities = 34/179 (18%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 291 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG----------GYPKVFLGGLPSNVTET 440
+ +L G + + +K + + ++ + + N+T+
Sbjct: 295 QAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDE 354
Query: 441 DLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQE-HFINLNGKQVEI 614
D++ F +G + E V + ++ +S+GFG++ + + IS ++ + +L G+ + +
Sbjct: 355 DVKAIFEPFGDI-EFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +3
Query: 108 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 287
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 288 VN-LVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRG 386
V+ +L N +GRT+ K P+++ + KRG
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVER 566
VF+G L E L +FG G + V I+ D + +GF ++ F+D + V++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEH 581
+F+ G+ S + E +L+ F ++G V V IM + K SRGFGFLSF +VE T
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFS---TVEEATSA- 158
Query: 582 FINLNGKQ 605
NLN ++
Sbjct: 159 IDNLNSQE 166
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
P+ ++ LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 282 SLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 386
+ N + GR ++ + P G
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 291 NLVLQN 308
L + N
Sbjct: 86 VLAVDN 91
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/52 (32%), Positives = 34/52 (65%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEIS 557
+++G L ++ E D+ F +G+ +++ ++ D+E KS+GF FL +ED+ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 5e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 105 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 285 LV-NLVLQNG 311
LV N +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.4 bits (105), Expect = 5e-06
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Frame = +3
Query: 114 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 287
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 288 VNLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPKVFLGG 416
+NG P +L T D KP N +T+ R Y + G
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHG 135
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +3
Query: 399 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFED 548
++F+G L ++V + L F Y +++ ++ D+E K +RGFGF+SF+D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK-TRGFGFVSFKD 79
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 45.6 bits (103), Expect = 9e-06
Identities = 35/146 (23%), Positives = 67/146 (45%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F + L+ +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA-LICISA 356
Query: 312 PHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 491
+ K LQ + +++ LP + E+D+ F + K++ +
Sbjct: 357 MTLCGYQCSFAKESFSARLQS-LQDTESTNLYISNLPLHWNESDISTLF-KPSKIISNRV 414
Query: 492 MYDQEKKKSRGFGFLSFEDEISVERV 569
+ D K++SRG GF +D + E +
Sbjct: 415 LRD-SKEQSRGVGFARMQDRKTAEDI 439
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
+F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 384 GGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVE 563
G Y +FL L + E+D+ F RYG + + ++ ++ KS G+ F+ FE E ++
Sbjct: 96 GDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLK 155
Query: 564 RVTQEHF-INLNGKQVEI 614
+ + LNG+++ +
Sbjct: 156 VAYKASAGLMLNGRRIVV 173
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 417 LPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFED 548
L + E +LR F R+G + V + D+E +++GF F+S+ D
Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 435 ETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVER 566
+ DL + F R+GK++ ++ D+E S + F+ F+++ SVE+
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 299
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + N+V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 300 LQ 305
+
Sbjct: 163 AE 164
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 42.3 bits (95), Expect = 9e-05
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 2/164 (1%)
Frame = +3
Query: 171 NLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKP 350
++ + FS YG V+D V + +R F +V P + LQ L+ +
Sbjct: 681 DITKLFSAYGNVVD-VRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVF 739
Query: 351 CNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRG 524
+ + P+ G Y ++++ + V E D+ FF YG+V V I + + +G
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKG 797
Query: 525 FGFLSFEDEISVERVTQEHFINLNGKQVEIKRAXPRDGSGKLRV 656
FG++ E L + + + + PR+ K RV
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSKPRESLEKTRV 841
Score = 33.9 bits (74), Expect = 0.030
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEK 509
V + LPS+++E +L++FF G ++ + I+ D +K
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQK 627
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +3
Query: 408 LGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEHFI 587
+G L ++TE DL FFG V + ++ D ++SRGFG++ FE ++
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 588 NLNGKQVEIKRAXPR 632
+L G+ V I A PR
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 34.3 bits (75), Expect = 0.023
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 138 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 317
VG LS++ ++ +L +F I V+ +E RSRGFG+V F ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 318 QLDGRTIDPKPCNPR 362
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.7 bits (91), Expect = 3e-04
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Frame = +3
Query: 147 LSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLD 326
L + ++L+ F + G VI + N E GRSRG G V + +Q H D
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM-LHNTD 247
Query: 327 --GRTIDPK-------PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 479
GRT++ + G +++G LP ++ +L F G V+
Sbjct: 248 FMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVI 307
Query: 480 EVVIMYDQEKKKSRGFGFLSFEDE 551
I Y+ + S+GFG + FE+E
Sbjct: 308 RARIAYEPTGR-SKGFGVVQFENE 330
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +3
Query: 120 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 275
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 5e-04
Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 5/184 (2%)
Frame = +3
Query: 111 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 290
D ++ +++G L + + L + G V++ + ++ GFGF F V
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 291 NLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRY 467
Q +L G+ I + G +F+G L V E L F
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGAN---LFVGNLDPLVDERVLYDTFSAL 122
Query: 468 GKVMEVVIMYDQEKKKSRGFGFLSFED----EISVERVTQEHFINLNGKQVEIKRAXPRD 635
G++++ + E +S+G+GF+S++ + ++E + + +N K + + A R+
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMN---KPITVSYAFKRE 179
Query: 636 GSGK 647
G G+
Sbjct: 180 GKGE 183
Score = 39.5 bits (88), Expect = 6e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQ-E 578
++LG L VT++ L + G V+ + I D+ + GFGF F E VE Q
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 579 HFINLNGKQVEIKRAXPRDGSGKL 650
+ + L GK + + RA G L
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTL 96
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 311
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 312 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVF 407
+ G R P R L K P R G YP+ +
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSY 105
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 117 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 284
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVER 566
VF+G LPS+ E ++ FG++GK+ + I+ KK FL+ D I V R
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL---SKKNIAFVHFLNIRDAIKVVR 352
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 399 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFED 548
++FL L + E DL+ FG +G++ +V + D++ +GF ++ F D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +3
Query: 507 KKKSRGFGFLSFEDEISVERVTQEHFIN---LNGKQVEIK 617
K S GFGF+ F+D+ S V H +N L+G ++EIK
Sbjct: 661 KYLSMGFGFVEFKDKASA--VAAMHAMNGFVLDGHKLEIK 698
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFED 548
VF+G +P +V+E + F + G V ++ D E +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 278
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
Score = 33.5 bits (73), Expect = 0.040
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 399 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFED 548
++F+G +P T D+ FF YG++++ +M GFGF+ ED
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.023
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Frame = +3
Query: 201 EVIDCVVMKNSESG---RSRGFGFVTFADPSLVNLVLQNGP-HQLDGRTIDPK------- 347
E++ CV ES + F++F DPS Q+ +L R + K
Sbjct: 130 EILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKVGWGKNS 189
Query: 348 PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 503
N L ++ G VFLG LP+ +TE ++R +G + ++ I+ ++
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 168 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 281
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +3
Query: 402 VFLGGLPSNVTET--DLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEI-SVERVT 572
+F+ L N+ L F ++G++ + + S+G+GF+SF +V+ +
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 573 QEHFINLNGKQVEIKRAXPRDGSGK 647
+ + K++ + A R+ K
Sbjct: 481 TLNGVLFGKKRLFVNYAEKREDRKK 505
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.053
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +3
Query: 399 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKS-RGFGFLSFEDEISVERVTQ 575
++++GGL S++ +DL F R+G V + I+ + + F +L+F + + +
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 576 EHFIN--LNGKQVEIKRAXP 629
+ N G ++ I+ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
Score = 33.1 bits (72), Expect = 0.053
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 129 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 272
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.070
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 102 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 206
P +DE ++VG + S E + ++FS+YG+V
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 159 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 504 EKKKSRGFGFLSFEDEISVERVTQEHFINLNGKQV 608
E+++ RGFGF+SF + R +E +NGKQV
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEE----MNGKQV 283
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 275
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 276 D 278
+
Sbjct: 267 N 267
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 500
+FLGG+ +V E LR F R+G V +++ ++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHN 440
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQEH 581
+++G LPS V+ T + F YG V + ++ + FL+F+ + + V +E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS------AFLNFDSVETAKHVLEE- 641
Query: 582 FINLNGKQV 608
LNGK++
Sbjct: 642 ---LNGKRI 647
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 174 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 305
L FS YG V+D V +K + + RG V F DPS + ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.86
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 288 VNLVLQNGPHQLDGRTIDPKPCNPRTLQKP-KRGGGYP--KVFLGGLPSNVTETDLRV-F 455
VN+ N P LD + PK R P R G P ++ L GL + E + +
Sbjct: 35 VNISSDN-PRLLD--SYRPKGNYGRDRNSPLSRHIGVPNQEIILQGLTPEILEEHIELAL 91
Query: 456 FGRYGKVMEVVIMYDQEKKKSRGFGFLSF 542
+ KV V ++ ++E +KSR F F F
Sbjct: 92 YATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 664 GFPTRSLPDPSRGXARFISTCFP 596
GFP RSL D G ARF+S P
Sbjct: 25 GFPVRSLLDIGCGDARFLSYLVP 47
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 186 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 AGCHRTLPKPISG-YFSDAMGRSWRWSLCMIKR 507
AG T+PKP++G Y SD RW + KR
Sbjct: 476 AGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKR 508
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 604 CFPLRLMKCSWVTLSTEISSSKDK 533
C R++ C+W +LST + + K+K
Sbjct: 946 CQQSRIIGCTWTSLSTRLGTLKEK 969
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSFEDEISVERVTQE 578
+F+ L +T ++ FGRYG V ++ + ++RG F+ +E+ R ++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENVQDARRACEK 69
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 132 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 272
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 468 GKVMEVVIMYDQEKKKSRGFGFLSFEDEISV 560
GK+ E + + D+E K+ GF FED + V
Sbjct: 101 GKIEEAMKLSDEEFSKTYGFSKPVFEDNVVV 131
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 402 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGFGFLSF-EDEISVERVTQE 578
+ + L NVT+ + FG YG + + + ++ + ++G+ ++ + + + V +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 579 HFINLNGKQ--VEIKR 620
+ L+G++ V IKR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 347 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 445
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 99 NPDMDDDEKGKLFV---GGLSWETSQENLQRYFSRYGEVIDCVVMKNS-ESGRSRGFGFV 266
N D+ D + L++ L W+ + + R RYG I C+ K GR + F
Sbjct: 154 NHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGGRLLDYYFN 213
Query: 267 TFADPSLVNLVLQNGPHQLDGRTIDPKP 350
L NL + +L DP P
Sbjct: 214 DLVCFDLNNLNTSDSRWELASVVNDPPP 241
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +3
Query: 120 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 254
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,567
Number of Sequences: 5004
Number of extensions: 63976
Number of successful extensions: 241
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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