Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_B14
(938 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 149 4e-37
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 95 1e-20
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 58 2e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 57 4e-09
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 53 7e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 52 2e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 4e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 3e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 3e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 6e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 6e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 46 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 44 3e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 7e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 9e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.004
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.006
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.014
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.019
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.025
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.025
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.025
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.033
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.058
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.077
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 32 0.10
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.54
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 30 0.54
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.95
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.9
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.9
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 3.8
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 6.7
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 8.8
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 8.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 149 bits (362), Expect = 4e-37
Identities = 66/144 (45%), Positives = 102/144 (70%)
Frame = +1
Query: 166 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 345
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P VN V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 346 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 525
+ H LDG+ IDPK PR Q+ K+F+GG+P + TE + R FF ++G+V+
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKT-----AKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 526 EVVIMYDQEKKKSRGXGFLSFEDE 597
+ +M D++ + RG GF+++E+E
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENE 298
Score = 67.7 bits (158), Expect = 2e-12
Identities = 27/90 (30%), Positives = 53/90 (58%)
Frame = +1
Query: 139 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
R P + ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 319 ADPSLVNLVLQNGPHQLDGRTIDPKPCNPR 408
+ S V + + G+ ++ K P+
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 49.2 bits (112), Expect = 8e-07
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1
Query: 445 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDEILLRE 612
K+F+GGL T+ LR +F ++G+V++ +M D +SRG GFL+F++ + E
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNE 219
Score = 34.3 bits (75), Expect = 0.025
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 567 GXWILVFRG*NSVERVTQEPFINLNGKQVEIKRAXPR 677
G + + ++VE +P+I ++GK VE+KRA P+
Sbjct: 289 GFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 95.5 bits (227), Expect = 1e-20
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Frame = +1
Query: 148 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 327
P D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 328 SLVN-LVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRGG-----GYPK--VFLGGLP 468
V NG ++DGR + +P+P NP+ + + G P VF+G L
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 469 SNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
N TE DL FG G + + + D + + +G G+++F D
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +1
Query: 151 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 330
D + +FVG LS+ ++++L F G++ + + +SGR +GFG+VTF+D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 331 LVNLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 438
++ H + GR PC P+ GGG
Sbjct: 419 SAKKCVEMNGHFIAGR-----PCR-LDFSTPRTGGG 448
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 57.6 bits (133), Expect = 2e-09
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA---DPSLVNLVL 348
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+ D L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 349 QNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETD-L 492
+N +L GR + PR ++K R P++ + LP ++ + L
Sbjct: 67 KN--KKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 493 RVFFGRYGKVMEVVI 537
F ++GKV E+ I
Sbjct: 125 EPHFSKFGKVREIKI 139
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSF 588
+F+ L + DL FF G + V++ + E ++RG GF++F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 56.8 bits (131), Expect = 4e-09
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Frame = +1
Query: 145 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 324
+P + G +F+ L + L FS +G+++ C V + E G ++G+GFV F
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDS 217
Query: 325 PSLVNLVLQ--NGPHQLDGRTIDPKPCNPRTLQKPKRG--GGYPKVFLGGLPSNVTETDL 492
N ++ NG D + + R Q + V++ L + +TE +
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEF 277
Query: 493 RVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSF 588
FG++G++ + ++ DQ K RG GF+++
Sbjct: 278 SDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNY 308
Score = 42.7 bits (96), Expect = 7e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVN-LVLQN 354
LF+ L E E L+ FS +G + +M + E G+S+GFGFV + P N V +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 355 GPHQLDGRTI 384
L G+ +
Sbjct: 425 NQRMLAGKPL 434
Score = 39.9 bits (89), Expect = 5e-04
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ-- 351
+++ L E +++ F ++GE+ ++K+ ++ + RGFGFV +A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 352 -----NGPHQLDGRTIDP--------KPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL 492
G GR K L+K + G +F+ L V + L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQDEVDDERL 380
Query: 493 RVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSF 588
+ F +G + IM D E+ KS+G GF+ +
Sbjct: 381 KAEFSAFGTITSAKIMTD-EQGKSKGFGFVCY 411
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 52.8 bits (121), Expect = 7e-08
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 4/148 (2%)
Frame = +1
Query: 166 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 345
+K L++G L ++ +Q+ ++ G+ + +++N +G + G+ FV FA P +
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 346 LQNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL-RVFFGRY 513
+ + G K +K +F+G L NV E D+ +F RY
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 514 GKVMEVVIMYDQEKKKSRGXGFLSFEDE 597
IM D + SRG GF+ F DE
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDE 238
Score = 33.5 bits (73), Expect = 0.044
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 148 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 324
P D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 51.6 bits (118), Expect = 2e-07
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Frame = +1
Query: 202 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRT 381
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 382 I--------DPKPCNP-RTLQKPKRGGGYPK-----VFLGGLPSNVTETDLRVFFGRYGK 519
I +P P TL K K +F+G L T+ DL+ FG+ G+
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQ 253
Query: 520 VMEVVIMYDQEKKKSRGXGFLSFED 594
+ V +M ++ K +G GF+ F D
Sbjct: 254 IRRVRLMTFEDTGKCKGFGFVDFPD 278
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 324
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 4e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +1
Query: 154 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 333
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 334 VN-LVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRG 432
V+ +L N +GRT+ K P+++ + KRG
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
VF+G L E L +FG G + V I+ D + +G ++ F+D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +1
Query: 157 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 327
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.2 bits (107), Expect = 3e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +1
Query: 157 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 336
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 337 NLVLQN 354
L + N
Sbjct: 86 VLAVDN 91
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDE 597
+++G L ++ E D+ F +G+ +++ ++ D+E KS+G FL +ED+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQ 82
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 6e-06
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 151 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 330
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 331 LV-NLVLQNG 357
LV N +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.4 bits (105), Expect = 6e-06
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Frame = +1
Query: 160 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 333
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 334 VNLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPKVFLGG 462
+NG P +L T D KP N +T+ R Y + G
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHG 135
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +1
Query: 445 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
++F+G L ++V + L F Y +++ ++ D+E K+RG GF+SF+D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKD 79
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 45.6 bits (103), Expect = 1e-05
Identities = 31/161 (19%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = +1
Query: 157 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 336
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 337 NLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG----------GYPKVFLGGLPSNVTET 486
+ +L G + + +K + + ++ + + N+T+
Sbjct: 295 QAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDE 354
Query: 487 DLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDEILLR 609
D++ F +G + E V + ++ +S+G G++ + + I R
Sbjct: 355 DVKAIFEPFGDI-EFVHLQRDDQNRSKGFGYIQYRNPISAR 394
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 148 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 327
P+ ++ LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 328 SLVNLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 432
+ N + GR ++ + P G
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSF 588
+F+ G+ S + E +L+ F ++G V V IM + K SRG GFLSF
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
+F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 430 GGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDE 597
G Y +FL L + E+D+ F RYG + + ++ ++ KS G F+ FE E
Sbjct: 96 GDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERE 151
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 44.0 bits (99), Expect = 3e-05
Identities = 34/139 (24%), Positives = 64/139 (46%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 357
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F + L+ +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA-LICISA 356
Query: 358 PHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 537
+ K LQ + +++ LP + E+D+ F + K++ +
Sbjct: 357 MTLCGYQCSFAKESFSARLQS-LQDTESTNLYISNLPLHWNESDISTLF-KPSKIISNRV 414
Query: 538 MYDQEKKKSRGXGFLSFED 594
+ D K++SRG GF +D
Sbjct: 415 LRD-SKEQSRGVGFARMQD 432
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDE 597
V++ GLP N ++ +L ++ R+GKV + D E +G GF FE+E
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEE 347
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 163 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 324
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
Score = 33.5 bits (73), Expect = 0.044
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 463 LPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
L + E +LR F R+G + V + D+E +++G F+S+ D
Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
Score = 30.3 bits (65), Expect = 0.41
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 481 ETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDE 597
+ DL + F R+GK++ ++ D+E S F+ F+++
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNK 295
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +1
Query: 166 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLV 345
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + N+V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 346 LQ 351
+
Sbjct: 163 AE 164
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 9e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +1
Query: 166 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 321
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.002
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNG 357
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 358 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVF 453
+ G R P R L K P R G YP+ +
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSY 105
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 163 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 330
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
LFVG L + L FS G+++ + E+GRS+G+GFV++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 32.3 bits (70), Expect = 0.10
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 336
D ++ +++G L + + L + G V++ + ++ GFGF F V
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 337 NLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRY 513
Q +L G+ I + G +F+G L V E L F
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGAN---LFVGNLDPLVDERVLYDTFSAL 122
Query: 514 GKVMEVVIMYDQEKKKSRGXGFLSFE 591
G++++ + E +S+G GF+S++
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYD 148
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 324
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 175 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 324
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 445 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
++F+G +P T D+ FF YG++++ +M G GF+ ED
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.014
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFEDEI 600
VF+G LPS+ E ++ FG++GK+ + I+ KK FL+ D I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL---SKKNIAFVHFLNIRDAI 348
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.019
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 445 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
++FL L + E DL+ FG +G++ +V + D++ +G ++ F D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.025
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Frame = +1
Query: 247 EVIDCVVMKNSESG---RSRGFGFVTFADPSLVNLVLQNGP-HQLDGRTIDPK------- 393
E++ CV ES + F++F DPS Q+ +L R + K
Sbjct: 130 EILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKVGWGKNS 189
Query: 394 PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 549
N L ++ G VFLG LP+ +TE ++R +G + ++ I+ ++
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.025
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 214 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 327
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 34.3 bits (75), Expect = 0.025
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +1
Query: 184 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPH 363
VG LS++ ++ +L +F I V+ +E RSRGFG+V F ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 364 QLDGRTIDPKPCNPR 408
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.9 bits (74), Expect = 0.033
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEK 555
V + LPS+++E +L++FF G ++ + I+ D +K
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQK 627
Score = 33.5 bits (73), Expect = 0.044
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +1
Query: 217 NLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQNGPHQLDGRTIDPKP 396
++ + FS YG V+D V + +R F +V P + LQ L+ +
Sbjct: 681 DITKLFSAYGNVVD-VRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVF 739
Query: 397 CNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRG 570
+ + P+ G Y ++++ + V E D+ FF YG+V V I + + +G
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKG 797
Query: 571 XGFL 582
G++
Sbjct: 798 FGYV 801
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.058
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 175 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 318
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 445 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 540
++++GGL S++ +DL F R+G V + I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.077
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 148 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 252
P +DE ++VG + S E + ++FS+YG+V
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 205 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 32.3 bits (70), Expect = 0.10
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 10 GPGLGYPRALLAYWIITRVGLVLVWFG 90
G GLG PR L +W + +GL L W G
Sbjct: 2268 GVGLGAPRWLQQFWATSNIGLYLPWAG 2294
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 546
+FLGG+ +V E LR F R+G V +++ ++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHN 440
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 220 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVNLVLQ 351
L FS YG V+D V +K + + RG V F DPS + ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.95
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 10 GPGLGYPRALLAYWIITRVGLVLVWFG 90
G GLG PR L W + +G+ L W G
Sbjct: 2216 GVGLGSPRWLQMMWGTSNIGVYLPWAG 2242
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -1
Query: 680 VSRLCALYLNLLPVEVNEGFLGHSLNRISSSKDKNPXPLDFFFS*SYIMTTSMT 519
V+ + LNL ++ E HSL +I++ ++K P D +S I + + T
Sbjct: 1113 VTEKLGVQLNLPKTKILEKVSSHSLAQITALREKEPKDADSTYSKEKIFSATST 1166
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 321
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 322 D 324
+
Sbjct: 267 N 267
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 232 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 458 AGCHRTLPKPISG-YFSDAMGRSWRWSLCMIKR 553
AG T+PKP++G Y SD RW + KR
Sbjct: 476 AGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKR 508
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 448 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEKKKSRGXGFLSFED 594
+F+ L +T ++ FGRYG V ++ + ++RG F+ +E+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYEN 59
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 178 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 318
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 393 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 491
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 8.8
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +1
Query: 145 NPDMDDDEKGKLFV---GGLSWETSQENLQRYFSRYGEVIDCVVMKNS-ESGRSRGFGFV 312
N D+ D + L++ L W+ + + R RYG I C+ K GR + F
Sbjct: 154 NHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLGSKICLFGGRLLDYYFN 213
Query: 313 TFADPSLVNLVLQNGPHQLDGRTIDPKP 396
L NL + +L DP P
Sbjct: 214 DLVCFDLNNLNTSDSRWELASVVNDPPP 241
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 166 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 300
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,584
Number of Sequences: 5004
Number of extensions: 66298
Number of successful extensions: 223
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -