Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_B10
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 31 0.29
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 6.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 6.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 8.1
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 8.1
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 30.7 bits (66), Expect = 0.29
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +3
Query: 42 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 221
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 222 GSALSP 239
GS +SP
Sbjct: 424 GSIVSP 429
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Frame = +2
Query: 299 SSPMTPPSTTRVGRRRCFIDDFRPQLPPWDS---------GSGSGASTLTPRKAQ-RCYS 448
S P PP ++RV + RP PP S G+GS S+L P R +
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 449 KGVALRTPR*ASLSRLGASTPPPPP 523
G P+ G S PPPPP
Sbjct: 348 AGSIPLPPQ-------GRSAPPPPP 365
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 196 VTSQPESRKAPPSPRLLFSLYINDIPRSPETHLALFA 306
+ +QP+ K PSP F L+ + RS ET+L +A
Sbjct: 47 IDTQPKEEKPEPSPSSPFGLFAYVVKRS-ETYLIQYA 82
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 563 PRRSNI*ASPSTVG*HSXPTSRRYAIVPPSS*DVSTR 673
P SN + ST H P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 576 FDLRGPRYGLVVHRDWANGGGGGVDAPSRERD 481
F+L Y L +W GG GV AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.5
Identities = 35/140 (25%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Frame = +2
Query: 161 PISSRGNAFPAP-SRHSRSPARLRPLPXYYSVCIL-TIYPGLRRPIWRSSPMTPPSTTRV 334
P S+ + P P + S + PLP + C T P +P PP++T
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS- 311
Query: 335 GRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCYSK--------GVALRTPR*ASLS 490
P P S +G+ +S L P + C + TP S
Sbjct: 312 -------STSTPPPPASTSSTGTSSSPL-PSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 363
Query: 491 RLGASTPPPPPFAQSRCTTS 550
STPPPP S T+S
Sbjct: 364 TSSTSTPPPPASTSSTGTSS 383
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 152 VRQVVSYDEHEPVWHSHV 99
+R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 460 PPNTTLSIPLPTRRVNTPAPAVRPITMYDQPIPWAPKVKYLGVT 591
PP + + P PT NTPA T+ IP P V +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 271 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 441
P++ + +LF+D++ + S +L ++ + F++ + ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385
Query: 442 LFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 531
L K+ RP PLP + P+ VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 394 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 489
F+ W+ P+ S +L ++G PP + LS L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,769,038
Number of Sequences: 5004
Number of extensions: 86170
Number of successful extensions: 292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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