Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_FL5_B08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    31   0.93 
02_01_0054 - 404464-405152,406087-406618                               29   5.0  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.6  
12_01_0524 - 4167867-4168445                                           28   8.7  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.7  
05_03_0575 - 15643819-15644295                                         28   8.7  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.7  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   8.7  

>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 356 RLWRPDVVLLNAAATTGGDYALRARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTF 535
           R +  DVV+L AAA      A     +++     + AW   L    SL +W      CT+
Sbjct: 7   RFFLVDVVVLFAAAAAAAIPASAEAAASSSQTDALLAWKASLDDAASLSDWTRAAPVCTW 66

Query: 536 K 538
           +
Sbjct: 67  R 67


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -1

Query: 358 AFRGHQPSVAAPLPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDY 200
           A  G   +VA     V +  +VDP  L       K  +YS G L L  ++ S   G    
Sbjct: 258 ACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGP 317

Query: 199 DFGVGGGVPIVRCEERVDHEG 137
           D G GGG    R   RV  EG
Sbjct: 318 DGGAGGGNLTARLLPRVRTEG 338


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 244 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 360
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -1

Query: 343 QPSVAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 164
           QPS AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 163 CEERVDHEGQ*C 128
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 250 VHRANTGRSSNELDRQTTELERRGVG 327
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>05_03_0575 - 15643819-15644295
          Length = 158

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -1

Query: 469 PSAYPGDGAVIRYTGAESVVPAGGCSRV*QYHVRPPQAFRGHQPSVAAPLPCVPTQSFVD 290
           P A P    V+R    +S     G +   +   RPP +F   Q + AA  P  P  S   
Sbjct: 61  PEANPFGARVVRLYVRDSQAKVRGIAYEKKRRKRPPTSFSHSQAAAAATCPASPAASPTP 120

Query: 289 --PIHLKICLYSHGGLGLTNVSMSQMQG 212
                +  C+     +G T +S++  +G
Sbjct: 121 ERSADMGACVAIAVAVGCTPLSLAARRG 148


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTP 342
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 425 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 303
           R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,087,761
Number of Sequences: 37544
Number of extensions: 447035
Number of successful extensions: 1290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)