Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_B08
(892 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 57 2e-10
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 56 6e-10
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 52 7e-09
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 52 9e-09
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 52 9e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 52 9e-09
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 51 1e-08
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 50 3e-08
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 50 4e-08
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 49 5e-08
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 49 5e-08
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 49 5e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 49 5e-08
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 48 9e-08
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 48 9e-08
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 48 9e-08
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 48 1e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 47 2e-07
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 47 3e-07
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 46 4e-07
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 38 2e-04
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 38 2e-04
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 36 4e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 36 5e-04
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 33 0.004
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.5
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 56.8 bits (131), Expect = 2e-10
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Frame = +2
Query: 86 SLVL*LGAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRE 244
+++L L A C + D LL+ Y+R P S +VV L L L N+++
Sbjct: 5 TIILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKD 64
Query: 245 SESTVRIQADLQMNWIDKRLSWNAGEWGCNTWL-VSSERLWRPDVVLL-NAAATTGGDYA 418
T + L+ W D + W+ E+G T L V SE +W PD+VL NA G
Sbjct: 65 QILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTM 122
Query: 419 LRARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTFKFG 544
+A + G V W + + D TC KFG
Sbjct: 123 TKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFG 164
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 55.6 bits (128), Expect = 6e-10
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Frame = +2
Query: 116 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 280
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 281 MNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAAATTGGDY---ALRARVSNNGS 448
+ W L+W + E+ N+ V S +W PD+V +++ + G D ++ V N+G+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV-MHSVTSVGIDLEMPSVECIVFNSGT 146
Query: 449 VSWISAWTLXLQFLCSLDN--WANDMXTCT 532
+ + T +C D+ W D+ CT
Sbjct: 147 ILCVPFTTYTP--VCEYDHTWWPYDILNCT 174
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 52.0 bits (119), Expect = 7e-09
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Frame = +2
Query: 194 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWR 367
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 368 PDVVLLNAAATTGGDYALRAR----VSNNGSVSWISAWTLXLQFLCSLD--NWANDMXTC 529
PD+VL N A G+Y +R + + NG V W+ Q C++D + D TC
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVP--PAIYQSSCTIDVTYFPFDQQTC 165
Query: 530 TFKFG 544
KFG
Sbjct: 166 IMKFG 170
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 51.6 bits (118), Expect = 9e-09
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V++NGS ++ + C +D W D C KFG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPG--IFKSTCKIDITWFPFDDQHCDMKFG 198
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 51.6 bits (118), Expect = 9e-09
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V++NGS ++ + C +D W D C KFG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPG--IFKSTCKIDITWFPFDDQHCDMKFG 198
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 51.6 bits (118), Expect = 9e-09
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Frame = +2
Query: 116 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 274
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 275 LQMNWIDKRLSWNAGEWGCNTWL-VSSERLWRPDVVLL-NAAATTGGDYALRARVSNNGS 448
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 449 VSWISAWTLXLQFLCSLDNWANDMXTCTFKFG 544
V W ++ + D TC KFG
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFG 168
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 51.2 bits (117), Expect = 1e-08
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V++NGS ++ + C +D W D C KFG
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPG--IFKSTCKIDITWFPFDDQHCDMKFG 130
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 50.0 bits (114), Expect = 3e-08
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 289
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 290 IDKRLSWNAGEWGCNTWLVSSERLWRPDVVLLNAAAT---TGGDYALRARVSNNGSVSWI 460
+D+RL++ G+ + R+W+PD N + T R+ +G V +
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYS 121
Query: 461 SAWTLXLQFLCSLDNWANDMXTCTFKFG 544
S T+ +L+N+ D C +FG
Sbjct: 122 SRLTIKAGCPMNLENFPMDTQRCPLQFG 149
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 49.6 bits (113), Expect = 4e-08
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Frame = +2
Query: 143 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 301
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 302 LSWNAGEWGCNTWL-VSSERLWRPDVVLLNAAATTGGDYAL----RARVSNNGSVSWISA 466
L WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPP 151
Query: 467 WTLXLQFLCSLDNWANDMXTCTFKFG 544
+++ + D +C KFG
Sbjct: 152 AIYKSSCEINVEYFPFDEQSCIMKFG 177
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 49.2 bits (112), Expect = 5e-08
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V+++GS ++ + C +D W D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPG--IFKSTCKIDITWFPFDDQHCDMKFG 130
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 49.2 bits (112), Expect = 5e-08
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Frame = +2
Query: 77 GFSSLVL*LGAAECENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRE 244
GFS L L ++ T+L + L YD + P S +I N+T+ L + +
Sbjct: 28 GFSYL---LNCKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDD 84
Query: 245 SESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAAATTGGDYAL 421
S + + + + + W D LSW ++ G N V S+ +W PD+ + N+ T +
Sbjct: 85 WTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGI 144
Query: 422 ---RARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTFKFG 544
V ++GSVS + + + +W D C FG
Sbjct: 145 PPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFG 188
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 49.2 bits (112), Expect = 5e-08
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Frame = +2
Query: 143 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 307
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 308 WNAGEWGCNTWL-VSSERLWRPDVVLL-NAAATTGGDYALRARVSNNGSVSWISAWTLXL 481
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKS 151
Query: 482 QFLCSLDNWANDMXTCTFKFG 544
++ + D TC KFG
Sbjct: 152 SCEIDVEYFPFDEQTCVLKFG 172
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 49.2 bits (112), Expect = 5e-08
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Frame = +2
Query: 143 MIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRESESTVRIQADLQMNWIDKR 301
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 302 LSWNAGEWG-CNTWLVSSERLWRPDVVLLNAAATTGGDYAL----RARVSNNGSVSWISA 466
L WN ++G +T V SE +W PD+VL N A G+Y + +A + + G V W
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKP- 137
Query: 467 WTLXLQFLCSLD--NWANDMXTCTFKFG 544
+ C +D + D TC KFG
Sbjct: 138 -PAIYKSFCEIDVEYFPFDEQTCFMKFG 164
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V+++GS ++ + C +D W D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPG--IFKSTCKMDVAWFPFDDQHCDMKFG 130
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V+++GS ++ + C +D W D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPG--IFKSTCKIDIAWFPFDDQHCDMKFG 130
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLD-NW-ANDMXTCTFKFG 544
G Y V+++GS ++ + C +D W D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPG--IFKSTCKMDIAWFPFDDQHCDMKFG 130
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 48.0 bits (109), Expect = 1e-07
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 233 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPDVVLLNAA-ATTG 406
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 407 GDYALRARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTFKFG 544
G Y V+++GS ++ + + D C KFG
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFG 130
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 47.2 bits (107), Expect = 2e-07
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Frame = +2
Query: 143 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 307
+++ LL TY+ P +V++ L L ++ E + L++ W D +
Sbjct: 27 LLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLITNLWLKLEWNDVNMR 86
Query: 308 WNAGEWG-CNTWLVSSERLWRPDVVLLNAA-ATTGGDYALRARVSNNGSVSWISAWTLXL 481
WN ++G + RLW+PDV++ N+A G Y V NNG+ ++
Sbjct: 87 WNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPG--IF 144
Query: 482 QFLCSLD-NW-ANDMXTCTFKFG 544
+ C +D W D C KFG
Sbjct: 145 KSTCKIDITWFPFDDQRCEMKFG 167
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 46.8 bits (106), Expect = 3e-07
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Frame = +2
Query: 143 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 307
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 308 WNAGEWGCNTWL-VSSERLWRPDVVLLNAAATTGGDYAL----RARVSNNGSVSWISAWT 472
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAV 148
Query: 473 LXLQFLCSLDNWANDMXTCTFKFG 544
++ + D+ TC K G
Sbjct: 149 YKSSCSIDVEFFPYDVQTCVLKLG 172
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 46.4 bits (105), Expect = 4e-07
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +2
Query: 197 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCNTWLVSSERLWRPD 373
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 374 VVLLNAAATTGGDYALRAR--VSNNGSVSWIS 463
+L N A + VS+ G V W+S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLS 123
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 37.5 bits (83), Expect = 2e-04
Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 8/162 (4%)
Frame = +2
Query: 83 SSLVL*LGAAECENATSLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRES 247
S ++L G + ++++++++LL Y+ + P + VV + +R + E
Sbjct: 20 SKVMLTRGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSEL 79
Query: 248 ESTVRIQADLQMNWIDKRLSWNAGEWGCNTWLVSSERLWRPDVVLLNAAATTGGDYAL-- 421
+ + + +W D RLS+ + + ER+WRPD N + +
Sbjct: 80 DMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPN 139
Query: 422 -RARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTFKFG 544
R+S +G + + T+ + L N+ D +C G
Sbjct: 140 KLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILG 181
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 37.5 bits (83), Expect = 2e-04
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Frame = +2
Query: 104 GAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLH-LRHANIRESESTVRIQA 271
G N ++S ++DS +YD+ P+ + V +T++ L +++ E + +
Sbjct: 2 GGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDF 61
Query: 272 DLQMNWIDKRLSWNAGEWGCNTWLVSSE---RLWRPDVVLLNA------AATTGGDYALR 424
+ W D RL++ G T V SE +W PD +N ATT ++
Sbjct: 62 YFRQFWTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF--- 117
Query: 425 ARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTFK---FGF*DAQLXTKWD 577
R+ ++GS++ T+ +L + D C + FG+ + KW+
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWN 171
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 36.3 bits (80), Expect = 4e-04
Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Frame = +2
Query: 104 GAAECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLH-LRHANIRESESTVRIQA 271
G N ++S ++DS +YD+ P+ + V +T++ L +++ E +
Sbjct: 2 GGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDF 61
Query: 272 DLQMNWIDKRLSWNAGEWGCNTWLVSSE---RLWRPDVVLLNA------AATTGGDYALR 424
+ W D RL++ G T V SE +W PD +N ATT ++
Sbjct: 62 YFRQFWTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF--- 117
Query: 425 ARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCTFK---FGF*DAQLXTKWD 577
R+ ++GS++ T+ +L + D C + FG+ + KW+
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWN 171
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 35.9 bits (79), Expect = 5e-04
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Frame = +2
Query: 143 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 301
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 302 LSWN--AGEWGCNTWLVSSERLWRPDVVLLNAAATTGGDYAL---RARVSNNGSVSWISA 466
L +N G T L + R+W PD+ N + + R+ NGSV +
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIR 153
Query: 467 WTLXLQFLCSLDNWANDMXTCTFK 538
+L L +L + D C+ +
Sbjct: 154 ISLTLSCPMNLKLYPLDRQVCSLR 177
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.004
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +2
Query: 236 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCNTWLVSSERLWRPDVVLLNAAATTGGDY 415
I E I L W D+RL+++ E +E++W PD N + D
Sbjct: 75 ISEVNMDYTITMYLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDV 134
Query: 416 ALR---ARVSNNGSVSWISAWTLXLQFLCSLDNWANDMXTCT 532
R R+S +GSV++ +T L + L + D CT
Sbjct: 135 TERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCT 176
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 6.5
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 197 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWN--AGEWGCNTWLVSSE---R 358
++V+ + + N I + R+ ++ +WI+ RL E G + + E
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 359 LWRPDVVLLNA 391
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,105
Number of Sequences: 438
Number of extensions: 4181
Number of successful extensions: 56
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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