Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_FL5_B04
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 31 0.91
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.7
12_02_1174 - 26696869-26698191 29 4.9
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 29 6.4
04_01_0041 - 464695-464850,467485-469029 29 6.4
01_05_0227 - 19512866-19514983 29 6.4
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 28 8.5
05_03_0637 - 16465433-16466242 28 8.5
04_04_1125 + 31085106-31085714 28 8.5
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.5
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.91
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/51 (37%), Positives = 21/51 (41%)
Frame = +2
Query: 533 PPSPAISATSTRSSNPRIPYTXPPQT*HPFPSIP*TPYXKEFAPGLKPPXV 685
PP P T TR P P PP P PS+P P P +PP V
Sbjct: 123 PPPPPPPRTRTRVEPPHRP---PPVKPQPPPSLPPPPPPPPPPPPPRPPSV 170
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 536 PSPAISATSTRSSNPRIPYTXPPQT*HPFPSIP*TPYXKEFAPGLKPP 679
PSP +S++S RS P P + PP+ P P + + G KPP
Sbjct: 121 PSPRVSSSSPRSPTPSPPSSSPPR---PAPVVAAAEEPRSSGHG-KPP 164
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 527 IKPPS-PAISATSTRSSNPRIPYTXPPQT*HPFPSI-P*TPYXKEFAPGLKPP 679
+ PPS P + + P +P T PP P P + P TP P L PP
Sbjct: 30 VVPPSLPTTTPPAPTVVAPPLPTTPPPAVVAPSPPLPPLTPPPAIVPPALPPP 82
>05_03_0637 - 16465433-16466242
Length = 269
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 525 ASSHPPLRSRLHQPDHQIPEF-HTPXHPRL 611
++S PPLR L +P H P F H P H L
Sbjct: 132 STSAPPLRPLLPRPPHLHPAFHHQPFHHHL 161
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.3 bits (60), Expect = 8.5
Identities = 25/85 (29%), Positives = 30/85 (35%)
Frame = +2
Query: 425 LTFVGLLLTSQLKESMCWXXXXXXXXXXXXXXXCIKPPSPAISATSTRSSNPRIPYTXPP 604
L L L++QL + C PP AT T P P+T PP
Sbjct: 11 LLLAALALSAQLAPAAATWCGSNCPTTKPPPPPCQPPPPTPTPATPT---TPPTPWTPPP 67
Query: 605 QT*HPFPSIP*TPYXKEFAPGLKPP 679
T P P P TP+ P PP
Sbjct: 68 AT--PTPPTP-TPWTP--TPATPPP 87
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,373,085
Number of Sequences: 37544
Number of extensions: 466468
Number of successful extensions: 1346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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