Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_P22
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.091
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 0.091
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -3

Query: 232 RRSFTCEHLTKNSKRVRHNNPTIDSSTPGRSPQPTDNAQCTALGMSTTDCV--CKQTGNL 59
           R  ++  HL  N  R     PT+    P     P  ++  T  G+ +TD V  C    NL
Sbjct: 342 REQYSQSHLISNENRDFQTTPTVSVEQPHLFLYPEVSSTYTGFGIQSTDFVGDCSSLLNL 401


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 211 HLTKNSKRVRHNNPTIDSSTPGRSPQPTDN 122
           H+ +    +  N PT+DS+     P+P  N
Sbjct: 6   HVAQLPHHLSPNMPTMDSTVSSAKPEPELN 35


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 211  HLTKNSKRVRHNNPTIDSSTPGRSPQPTDNA 119
            H   +S ++     T +S T    P PTDNA
Sbjct: 1364 HAPPHSPQITLTATTTNSLTMKVRPHPTDNA 1394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,176
Number of Sequences: 438
Number of extensions: 2804
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)