Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_P13
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 31 0.80
04_01_0034 - 401208-402923 25 1.8
07_03_1107 - 24024387-24024497,24025799-24026410 30 1.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 3.2
01_06_0581 - 30386018-30386440 29 4.3
01_06_0317 + 28425408-28426079,28426286-28426351 29 4.3
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 5.7
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 7.5
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 28 7.5
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 9.9
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 523 PAARXPAXXXSRS-TXANTXPAPXPLXPGXPSPEQTXGXIAPAXLPP 660
P+A P+ + T T PAP P G P+P T + P+ PP
Sbjct: 140 PSASPPSTPGGPAPTPTPTRPAPSPSPTGPPTPSPTNPNLEPSPPPP 186
>04_01_0034 - 401208-402923
Length = 571
Score = 25.0 bits (52), Expect(2) = 1.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 499 PRLXVVXWPAARXPAXXXSRSTXANTXPAPXPLXP 603
PRL + PA P R+ + P P PL P
Sbjct: 297 PRLPLQPRPAPPPPPPQQQRAKPSRPPPPPPPLDP 331
Score = 23.8 bits (49), Expect(2) = 1.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 580 PAPXPLXPGXPSP 618
PAP P+ P PSP
Sbjct: 358 PAPPPILPAQPSP 370
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +1
Query: 568 ANTXPAPXPLXPGXPSPEQTXGXIAPAXLPPXXGSXXLXPKXXXNPVTSP 717
A+T PA P P P+P + AP PP + P T P
Sbjct: 58 ASTPPAAAPTTPATPAPAEAPTTPAPTKAPPTKSTKAPAPAPKAAKATPP 107
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 532 RXPAXXXSRSTXANTXPAPXPLXPGXPSPEQTXGXI-APAXLPPXXGS 672
R P + + A+ P P P PG P P G P PP GS
Sbjct: 598 RPPPAPSATANTASALPPPPPRPPGAPPPPPPPGKPGGPPPPPPRPGS 645
>01_06_0581 - 30386018-30386440
Length = 140
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 270 SGVRSQVLERLEMRLRSGGGGARRQ 344
SG+ +V +R+E R GGGG RR+
Sbjct: 31 SGIEVKVRKRVEKEARMGGGGRRRR 55
>01_06_0317 + 28425408-28426079,28426286-28426351
Length = 245
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 556 RSTXANTXPAPXPLXPGXPSPEQTXGXIAPAXLPP 660
RS T PAP PL P P P T A A P
Sbjct: 113 RSPEPETPPAPAPLPPPPPPPPDTSVAAAAAAARP 147
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 580 PAPXPLXPGXPSPEQTXGXIAPAXLPP 660
P P PL P PS Q G +P PP
Sbjct: 34 PPPPPLEPAPPSTPQLRGEASPPPPPP 60
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Frame = +1
Query: 526 AARXPAXXXSRSTXANTXPA---PXPLXPGXPSPEQTXGXI-APAXLPPXXGS 672
A R P + S ANT A P P PG P P G P PP GS
Sbjct: 898 APRVPRPPPAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPPPPGS 950
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 574 TXPA-PXPLXPGXPSPEQTXGXIAPAXLPPXXGSXXLXPKXXXNPVTSP 717
T PA P PL P SP + IAPA PP P SP
Sbjct: 63 TKPALPAPLPPTPASPGDSPPSIAPAGNPPTPAQAGAPPPSIAPGTGSP 111
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 237 HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGAR 338
H A C+ D G GVR + + RLR+G G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,982
Number of Sequences: 37544
Number of extensions: 200472
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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