Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_P12
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.37
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516... 30 2.6
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.5
03_05_0183 - 21681673-21682524 29 4.6
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 6.1
07_03_1086 + 23858419-23859423,23859527-23859610 29 6.1
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 29 6.1
01_06_0695 - 31292622-31293317 28 8.1
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 82 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 210
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>03_02_0034 -
5166987-5167010,5167596-5167659,5168071-5168174,
5168685-5168829,5168914-5169055,5169432-5169751,
5169895-5170196,5170603-5170647,5171218-5171268,
5171374-5171460,5171587-5171764,5172453-5172528,
5173018-5173234,5173604-5173909
Length = 686
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +1
Query: 76 ALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFG 255
A+PS R+ R S T S T + +RS +A V+ K D+ +RR + G
Sbjct: 438 AIPSPELRRVRTSFTGASSWVATTAMGKVVRSANAPVEPKAKVEDVEK----QRRRGKGG 493
Query: 256 CETRLVKSHCLEPPDS 303
C + + C PP S
Sbjct: 494 CNGTVSSARCRSPPPS 509
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 437 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 339
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 649 SQAFIATLLFDPSMSALPIIAKQNSPS 569
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 19 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 198
S +SPG L R HD +L KSST + R E SR +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787
Query: 199 DSID 210
+S++
Sbjct: 788 ESVE 791
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 6.1
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -2
Query: 497 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 333
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 332 GKDMLTVEPRESGGSK 285
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 350 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHPKRETRRRSPFGS 216
A+ A +GK + E E S+QCD T + + RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 34 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 168
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,277,452
Number of Sequences: 37544
Number of extensions: 489858
Number of successful extensions: 1457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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