Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_P09
         (771 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...   146   3e-35
BT015197-1|AAT94426.1|  954|Drosophila melanogaster RE71183p pro...    29   9.3  
AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-P...    29   9.3  

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type II retrotransposable
            element  R2Dm.  ).
          Length = 1057

 Score =  146 bits (354), Expect = 3e-35
 Identities = 85/233 (36%), Positives = 117/233 (50%)
 Frame = -2

Query: 719  PQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAV 540
            PQQRL  LR  LIP+  H   LG+++   LR  D  IR  V +WL LP DVP A+ HA  
Sbjct: 688  PQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHAPP 747

Query: 539  QDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVD 360
            + GGL IPS+R   P L +RR   +   P       A S    +K R    + R  +  +
Sbjct: 748  KSGGLGIPSLRWVAPMLRLRRLSNI-KWPHLTQNEVASSFLEAEKQR---ARDRLLAEQN 803

Query: 359  STTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHINA 180
                RP++  +W   L+ SVDG  LRE         W+ +    +TG++++  +   INA
Sbjct: 804  ELLSRPAIEKYWANKLYLSVDGSGLREGGHYGPQHGWVSQPTRLLTGKEYMDGIRLRINA 863

Query: 179  LPXXXXXXXXXXXXXXXSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIV 21
            LP                  CRAGC   ETT HI+Q+C+R+HG R+ RHN +V
Sbjct: 864  LPTKSRTTRGRHELER---QCRAGCDAPETTNHIMQKCYRSHGRRVARHNCVV 913


>BT015197-1|AAT94426.1|  954|Drosophila melanogaster RE71183p
           protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -3

Query: 562 RHIITPQFRTAA*RSHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNS 383
           R   +PQ R    R+ R  RP+        GG   H  +W  PPP      RN      S
Sbjct: 520 RRFSSPQQR----RNSRDRRPNSRERRSSPGGGGGHMNRWDNPPP-----ARNRRSSSGS 570

Query: 382 SAG 374
           SAG
Sbjct: 571 SAG 573


>AE014296-2238|AAF49848.1|  954|Drosophila melanogaster CG11274-PA
           protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -3

Query: 562 RHIITPQFRTAA*RSHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNS 383
           R   +PQ R    R+ R  RP+        GG   H  +W  PPP      RN      S
Sbjct: 520 RRFSSPQQR----RNSRDRRPNSRERRSSPGGGGGHMNRWDNPPP-----ARNRRSSSGS 570

Query: 382 SAG 374
           SAG
Sbjct: 571 SAG 573


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,318,950
Number of Sequences: 53049
Number of extensions: 936927
Number of successful extensions: 2962
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2960
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)