Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_P09
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.59 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 406 NCGGPGNSSAGSAV 365
           N GGPG+SSAG  V
Sbjct: 18  NLGGPGSSSAGGVV 31



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 632 LRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQ 537
           L ++ V +  + G+WL     +PK   +A+V+
Sbjct: 62  LSLVVVTVAISTGEWLLTEEKLPKTSSNASVE 93


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 633 IENARCPNPESSRTVAK 583
           I N RC NP++ RT  K
Sbjct: 411 ILNTRCENPDNDRTPFK 427


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 633 IENARCPNPESSRTVAK 583
           I N RC NP++ RT  K
Sbjct: 411 ILNTRCENPDNDRTPFK 427


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 633 IENARCPNPESSRTVAK 583
           I N RC NP++ RT  K
Sbjct: 411 ILNTRCENPDNDRTPFK 427


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 41  ESGRRVFCDTVVGCEPSSP*P 103
           E    +FC+T +GC+  +  P
Sbjct: 157 EVANEMFCETTIGCKDKNMAP 177


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 665 RAGISESDELSKSPTSVGGLKR 730
           +  + ESD+L +S   VGG +R
Sbjct: 50  KQNLHESDDLHESDGRVGGKRR 71


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 583 LSHCPTAFRIWTSSILN 633
           +  CP  F  WT ++L+
Sbjct: 153 VQECPLIFESWTHNVLD 169


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 562 LGTSAGSLSH 591
           LGTSAGSL H
Sbjct: 106 LGTSAGSLLH 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,311
Number of Sequences: 438
Number of extensions: 4681
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)