Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_P08
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    29   5.7  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 148 PAASGRRCSPTASTMAPCARAAGRGRSKSIPXR 50
           PA + RR SP+AS   P A    + RSKS P R
Sbjct: 342 PAPARRRRSPSASKSPPPAPKRAKSRSKSPPAR 374


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 317 SSDRLRRPRSTGPGXARITVFGCNFVMLDTLSLINIICPPTYQ**RIRASTMDITQCSRN 496
           S  R R  RS       +T  GC+        + NI+C   +   ++   T +  Q   N
Sbjct: 518 SDSRKRISRSFSASSLMLTCIGCDSEFKPASQVTNIMCDQCFAWQKMSVLTSNCDQFMGN 577

Query: 497 SGP 505
           SGP
Sbjct: 578 SGP 580


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 607 PRLESGGWIGPGVFYGGQNSVDGVSRRSDG 696
           PR   GG+ GPG ++ G+N   G  ++  G
Sbjct: 833 PRTGRGGYQGPGSWFPGRNERQGDKQKGSG 862


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,777
Number of Sequences: 27780
Number of extensions: 417785
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)