Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_P07
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0953 + 29111030-29111105,29112250-29113520                       29   3.3  
01_06_0581 - 30386018-30386440                                         29   4.3  
02_05_0073 - 25602268-25603182,25603273-25604190                       29   5.7  

>03_05_0953 + 29111030-29111105,29112250-29113520
          Length = 448

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 626 PXVFPGDAPRHTXWRPGAVXARGCSCFCSP 537
           P   PG  P+ T  +PG+  A G S  C+P
Sbjct: 376 PARLPGQQPQVTPLQPGSAAAAGPSALCAP 405


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 266 SGVRSQVLERLEMRLRSGGGGARRQ 340
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>02_05_0073 - 25602268-25603182,25603273-25604190
          Length = 610

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 230 PHHALRSHDHSGSGVRSQVLERLEMRLRSGGGG 328
           P H++RS   S  G  + V+ R     RSGGGG
Sbjct: 560 PEHSVRSRAGSSGGNSNNVVHRGRGAHRSGGGG 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,344
Number of Sequences: 37544
Number of extensions: 207003
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)