Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_P06
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   279   2e-77
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   279   2e-77
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.28 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  279 bits (685), Expect = 2e-77
 Identities = 135/187 (72%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = -3

Query: 737 QYFPTQAXNSX*RQVQAGVXXXR-DKKTQFWRYFXXXXXXXXXXXATSLCFVYPLDFART 561
           +YFPTQA N   +     V     DK TQF RYF           ATSLCFVYPLDFART
Sbjct: 82  RYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFART 141

Query: 560 RLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 381
           RLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTAR
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTAR 201

Query: 380 GMLPDPKNTPIVIS*AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWA 201
           GMLPDPK TP +IS  IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWA
Sbjct: 202 GMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWA 261

Query: 200 TIAKXRG 180
           TI K  G
Sbjct: 262 TIYKTEG 268



 Score = 51.6 bits (118), Expect = 9e-09
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -2

Query: 162 KGAFSNVLRGTGGAFVLVLYDEIKKVL 82
           KGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 274 KGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 31.5 bits (68), Expect = 0.010
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
 Frame = -3

Query: 527 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 354
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 353 PIVIS*AIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKX 186
             +            AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 185 RGNLGL 168
            G  GL
Sbjct: 170 DGITGL 175



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -3

Query: 584 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 450
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  279 bits (685), Expect = 2e-77
 Identities = 135/187 (72%), Positives = 149/187 (79%), Gaps = 1/187 (0%)
 Frame = -3

Query: 737 QYFPTQAXNSX*RQVQAGVXXXR-DKKTQFWRYFXXXXXXXXXXXATSLCFVYPLDFART 561
           +YFPTQA N   +     V     DK TQF RYF           ATSLCFVYPLDFART
Sbjct: 82  RYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFART 141

Query: 560 RLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 381
           RLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTAR
Sbjct: 142 RLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTAR 201

Query: 380 GMLPDPKNTPIVIS*AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWA 201
           GMLPDPK TP +IS  IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWA
Sbjct: 202 GMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWA 261

Query: 200 TIAKXRG 180
           TI K  G
Sbjct: 262 TIYKTEG 268



 Score = 51.6 bits (118), Expect = 9e-09
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -2

Query: 162 KGAFSNVLRGTGGAFVLVLYDEIKKVL 82
           KGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 274 KGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 31.5 bits (68), Expect = 0.010
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 6/126 (4%)
 Frame = -3

Query: 527 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNT 354
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D  + +      KNT
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNT 109

Query: 353 PIVIS*AIAQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKX 186
             +            AG  S    YP D  R R+    G+A  +  +    +C   I K 
Sbjct: 110 QFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKA 169

Query: 185 RGNLGL 168
            G  GL
Sbjct: 170 DGITGL 175



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -3

Query: 584 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 450
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 578 GGTRSTERWLRRHHRRPDYQRSNARTASSCH 670
           G T ST+  L+RH  +  +Q  N+   + CH
Sbjct: 378 GKTLSTKLTLKRHKEQQHFQPLNSAVCALCH 408


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 513 GEFTLAISLTDIGGKTGTCEVKGV 584
           G++ +  +    GGK G C +K V
Sbjct: 603 GQYGIVFACDGWGGKAGPCAIKSV 626


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 513 GEFTLAISLTDIGGKTGTCEVKGV 584
           G++ +  +    GGK G C +K V
Sbjct: 641 GQYGIVFACDGWGGKAGPCAIKSV 664


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 92  LISSYKTSTKAPPVPLRTLEKAPL 163
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 558 SCRRCR*GRWPA*ILRSRKLHQQDLQVRRSDRSVQRFRCVRAR 430
           SC R R   +     R  KLH +  ++     S +R+ C R R
Sbjct: 236 SCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSCSRER 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,891
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)