Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_O18
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 29 0.62
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.82
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 29 0.82
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.9
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.9
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 27 3.3
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 5.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 5.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 7.6
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 29.5 bits (63), Expect = 0.62
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -2
Query: 305 NGALRHHKHRSPSSSNPSLATKSSTSELTHRHSPLSFSPDLL 180
N + RH SSS+ S + KSSTS+L SP S P L
Sbjct: 14 NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.82
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 332 RHYGSS*SINGALRHHKHRSP-SSSNPSLATKSST-SELTHRHSPLSFSPD 186
R+YG + G ++ + +P SSS PS+ ++S+T SE SP+S D
Sbjct: 58 RYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSSPVSSYSD 108
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 29.1 bits (62), Expect = 0.82
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 356 KPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLATKSSTSELTHRHSPLS 198
KPS +R G S ++ AL K S S P + S T +++ +HSP+S
Sbjct: 24 KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = -2
Query: 401 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLATKSSTSEL 222
+S W T + G +S + + S G + SPS+S+PS A+ S S+
Sbjct: 21 KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80
Query: 221 THRHS 207
+ +
Sbjct: 81 VRKEA 85
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.9
Identities = 29/92 (31%), Positives = 38/92 (41%)
Frame = -2
Query: 422 TT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLAT 243
TT PS S + S + S+S + SS S + + S SSS+ S+
Sbjct: 151 TTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210
Query: 242 KSSTSELTHRHSPLSFSPDLLSGSRFRSGGRF 147
SSTS +H S S S S SR S F
Sbjct: 211 TSSTSS-SHSSSS-SSSSSSSSSSRPSSSSSF 240
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 374 PSRPNGKPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLATKSSTSELTHRHSPLSF 195
PS + +TSP + SS S + + S SSS+ S ++ SS+S + S S
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 203
Query: 194 S 192
S
Sbjct: 204 S 204
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.9
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = -2
Query: 404 HRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPS--LATKSST 231
H+S+ H + S PN + + P R S+ G+ + + S + S L +K+
Sbjct: 179 HKSQSYQHLKNSPPNSRTARKPVPRRANSASHNLGSTKSPNGNAKESLSRSAELPSKAKP 238
Query: 230 SELT--HRHSPLSFSPDLLSGSRFRSGG 153
E+ +R P SP+ S R R GG
Sbjct: 239 MEINNGYRKKPSPLSPN--SSIRNREGG 264
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 3.3
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = -2
Query: 398 SRWKLHTRPSRPNGKPSTSPKARHYGSS*--SINGA-LRHHKHRSPSSSNPSLATKSSTS 228
S + LH P PN ST + SS SI+ + L + S SS+ +L T+ +TS
Sbjct: 88 SAFHLHFSPLTPN-HASTEAVSNFKQSSTIPSISKSNLTNPPLESEKSSDKALLTRPATS 146
Query: 227 ELTHRHSPLSFSPDLLSGSRFRSGGRFCEA 138
H + L+G+ GRFC A
Sbjct: 147 RRRCCHPTCTRITLRLAGNCLHCNGRFCAA 176
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 353 PSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLATKSSTSELTHRHSPLSFSPDLLSG 174
PS S +YG+ ++ +L S SSS+ S++T + T SP S S SG
Sbjct: 30 PSASVSI-NYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG 88
Query: 173 S 171
+
Sbjct: 89 T 89
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 4.4
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = -2
Query: 374 PSRPNGKPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLATKSSTSELTHRHSPLSF 195
PS + S+SP + SS S + + S SSS+ S ++KSS+S + S S
Sbjct: 154 PSSSSSSSSSSPSSSSSKSS-SSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASP 212
Query: 194 SPDLLSGSRFRS 159
S S S+F S
Sbjct: 213 SSS-KSSSKFSS 223
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 287 HKHRSPSSSNPSLATKSSTSELTHRH---SPLSFSPDLLS 177
H+ PSSS + +S T+ H H SPL+ +P ++S
Sbjct: 182 HESSEPSSSRHTADAQSITNASVHLHNSSSPLNRTPSVIS 221
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 356 KPSTSPKARHYGSS*SINGALRHHKHRSPSSSNPSLATKSSTSEL 222
+P++S H SS S L H P SNPSL S ++L
Sbjct: 266 RPASSTNPVHNTSSDSQR--LNHQNRHLPDDSNPSLMQSDSGNDL 308
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 374 PSRPNGKPSTSPKARHYGSS*SINGALRHHK--HRSPSSSNPSLATKSSTSE 225
PS PNGK + SP A S+N + SSSN SL ++ S+
Sbjct: 43 PSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSK 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,429
Number of Sequences: 5004
Number of extensions: 59118
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -