Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_O16
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    28   1.8  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   4.3  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.6  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 433 ILSPFSSPPSIEQPKPRQRQHSNSEPELVP 344
           I + ++SP SI +P P Q+  S+++P  VP
Sbjct: 189 ISTAYASPTSINEPLPDQQLSSSTKPIKVP 218


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 344 RHEENRRDPWLRKYYERKSKN 282
           R EE   + W RKY+E K K+
Sbjct: 345 RQEEEHNEVWHRKYFEWKDKD 365


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 430 LSPFSSPPSIEQPKPRQRQHSNSEPELVPVMKK 332
           L+PFS  P  E+P P ++  ++ +  L  V KK
Sbjct: 5   LNPFSKKPKDEEPLPLEQYEASEQKILGLVTKK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,531
Number of Sequences: 5004
Number of extensions: 30612
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)