Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_O08
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   181   9e-47
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   181   9e-47
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.75 
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    28   1.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.0  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.2  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  181 bits (441), Expect = 9e-47
 Identities = 92/166 (55%), Positives = 110/166 (66%)
 Frame = -1

Query: 775 QKKAHIMEIQLNXGTXGDKVKWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFS 596
           QKKAH+MEIQ+N G+  DKV+W REH EK + + S F Q+EMID IGVT+G+  +     
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 595 LAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 416
              K      H + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   
Sbjct: 233 WGTKRLPRKTH-RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG--- 288

Query: 415 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
            D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 289 DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = -2

Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKIDLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
           G   GP KR++TLRKSL  HT R ALE + LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 111 D 109
           D
Sbjct: 386 D 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  181 bits (441), Expect = 9e-47
 Identities = 92/166 (55%), Positives = 110/166 (66%)
 Frame = -1

Query: 775 QKKAHIMEIQLNXGTXGDKVKWXREHLEKPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFS 596
           QKKAH+MEIQ+N G+  DKV+W REH EK + + S F Q+EMID IGVT+G+  +     
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232

Query: 595 LAHKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 416
              K      H + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G   
Sbjct: 233 WGTKRLPRKTH-RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG--- 288

Query: 415 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
            D K    NAST++D +EK ITPMGGF  YG V NDFVM  G   G
Sbjct: 289 DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = -2

Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKIDLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
           G   GP KR++TLRKSL  HT R ALE + LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 111 D 109
           D
Sbjct: 386 D 386


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 499
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 593 QREVTPLYPLPLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFV 724
           Q  ++ L   P G T +V   + G+  +D ++  Q +S  FH V
Sbjct: 62  QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 368 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 130 HGYTQEGSYSRRSCGYHNPS 71
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 353 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 538
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +2

Query: 521 MPSSNAGNF--PKXLGVSYGGSFFVCQREVTPLYPLPLGDTNAVNHF----ILGKHRIDR 682
           +P S+ G    P  L    G S F    ++T    +  GD +  N F      G   + +
Sbjct: 137 LPPSSIGYVLPPSSLANGEGSSMF--DADMTTSNAVAHGDESISNEFRESFYFGNDNLSK 194

Query: 683 DRFLQMFSGP 712
           DR L+ F GP
Sbjct: 195 DRLLRPFQGP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,248
Number of Sequences: 5004
Number of extensions: 73294
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)