Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_N19
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 109 3e-25
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 28 1.3
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.3
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 3.9
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 27 3.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.0
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 9.0
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.0
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 109 bits (263), Expect = 3e-25
Identities = 56/121 (46%), Positives = 78/121 (64%)
Frame = -3
Query: 764 GSXXVXMGKNTMMRKAIKDHLGQQSSPRETVATHQGATLASCSPAETXVEVRDKLLENKV 585
G+ + MGKNTM+R+A++ + + +G + A+ EVR+ ++ N +
Sbjct: 47 GTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLK-EVRETIIANVI 105
Query: 584 QAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKV 405
APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ KV
Sbjct: 106 AAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKV 165
Query: 404 G 402
G
Sbjct: 166 G 166
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/81 (53%), Positives = 57/81 (70%)
Frame = -1
Query: 394 EATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIG 215
EATLLNMLNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+SL
Sbjct: 169 EATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGAN 228
Query: 214 YPTIASAPHSIANGFKNLLAI 152
YPTI S HS+ N +KNL+A+
Sbjct: 229 YPTILSVMHSVVNAYKNLVAV 249
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.3 bits (60), Expect = 1.3
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Frame = -3
Query: 713 KDHLGQQSSPRETVATHQGATLASCSPAETXVEVRDKLLENKVQAP-ARPGAIAPLSVVI 537
K G Q +E++ + Q + + + VEV+ K +++ V AP A+ + P+S
Sbjct: 779 KQPSGGQQLRQESLPSQQSSESKQSTQHQQPVEVQ-KSIQSDVSAPKAKEVSEKPVSHQA 837
Query: 536 PAHNTGLGPEKTSFFQA------LSIPTKISKGTIEIINDVHILKPGDK 408
N T QA SIP S + ++ ND H+ DK
Sbjct: 838 KPSNASQLSRNTDDTQAKEAPKEASIPDNASTASTKVSNDSHLKPDADK 886
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 442 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 567
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 435 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 557
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 116 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSS 256
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.6 bits (56), Expect = 3.9
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = -3
Query: 752 VXMGKNTMMRKAI-----KDHLGQQSSPRETVATHQGATLASCSPAETXVEVRDKLLENK 588
+ MGK +M KA+ ++H S + + G + P E + + ++N
Sbjct: 65 IFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEV-IGYFESFVQND 123
Query: 587 VQAPARPGAIAPLSVVIPA 531
AR GA+AP + VIPA
Sbjct: 124 F---ARAGAVAPFTHVIPA 139
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 640 VHPRRPSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPASV 512
+ P +PS +V+ + ++L VP PH S TPA+V
Sbjct: 313 IAPSQPSKTNVSAAYEKPAELSSSSVPFPH--KSQDSATPANV 353
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 300 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASXSSNLVTGLQDV 431
S +V +S TCL + NGE+ + ++S S T +Q++
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQEL 247
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 435 IVDDFNSTL*NLGRDRKSL 491
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,586
Number of Sequences: 5004
Number of extensions: 58144
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -