Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_N14
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   138   9e-34
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   134   2e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  138 bits (334), Expect = 9e-34
 Identities = 75/134 (55%), Positives = 90/134 (67%)
 Frame = -2

Query: 724 LXFXAHTRXYAYLRDVSXPGAFTXPDPKLHXREPRLLIVLDPAQDHQPITEASYVNIPVI 545
           L F AHT   A     + PG FT    + + REPRL++V DP  D Q I EAS+VNIPVI
Sbjct: 90  LKFAAHTGATAIAGRFT-PGNFTNYITRTY-REPRLIVVTDPRADAQAIKEASFVNIPVI 147

Query: 544 ALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR 365
           ALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYR
Sbjct: 148 ALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYR 207

Query: 364 DPLKKVKRMNNKPK 323
           DP ++V+R     K
Sbjct: 208 DP-EEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  134 bits (323), Expect = 2e-32
 Identities = 71/122 (58%), Positives = 83/122 (68%)
 Frame = -2

Query: 724 LXFXAHTRXYAYLRDVSXPGAFTXPDPKLHXREPRLLIVLDPAQDHQPITEASYVNIPVI 545
           L F AHT   A     + PG FT    + + REPRL+IV DP  D Q I EAS+VNIPVI
Sbjct: 91  LKFAAHTGATAIAGRFT-PGNFTNYITRTY-REPRLIIVTDPRADAQAIKEASFVNIPVI 148

Query: 544 ALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR 365
           ALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYR
Sbjct: 149 ALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYR 208

Query: 364 DP 359
           DP
Sbjct: 209 DP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = -2

Query: 667 GAFTXPDPKLHXREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 488
           G     D K     P L+++L+P ++     EA   ++P I + +TD+  R V   IP N
Sbjct: 166 GKLIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPAN 225

Query: 487 TKSSHSIGLMWWLLAR 440
             S     L+  LL+R
Sbjct: 226 DDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 577 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 467
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 469 IGLMWWLLAREVLRLRGVLPRDQRWD 392
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,528
Number of Sequences: 5004
Number of extensions: 53524
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)