Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_N12
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.8  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   7.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.7  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 101 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 229
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 256 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 161
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -1

Query: 355 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 176
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 175 LSASIQASLPSSEIYRQL 122
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 647 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 528
           P  P++ S+P  P+ P   E     +PP++  AP     P
Sbjct: 581 PVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 647 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 528
           P  P+  S+P  P+ P   E     +PP++   P A   P
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVP 605



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 647 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 528
           P  P+  S+P  P  P   E     +PP++  AP     P
Sbjct: 551 PVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 466 KLRALLVVIPRILRSPPPTHPLIEDV 389
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -3

Query: 647 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQV 480
           P  P +  +P NP TP+     P      +  A +  L P   G+  G   PY  V
Sbjct: 266 PVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLPP---GLKNGSDYPYLSV 317


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 143 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 45
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,572
Number of Sequences: 5004
Number of extensions: 59152
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)