Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_T7_N06
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 92 1e-19
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 92 1e-19
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.9
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.4
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 113
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 112 D 110
D
Sbjct: 386 D 386
Score = 77.8 bits (183), Expect = 2e-15
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = -3
Query: 594 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 71.7 bits (168), Expect = 1e-13
Identities = 41/93 (44%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = -2
Query: 829 RYCSV*XSLP-TLK*SCXTAXKKXHIMESNLTGYHRGQS-EWAREHLEKPIPVDSVFAQD 656
+YCSV L T A KK H+ME + G EWAREH EK + + S F Q+
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212
Query: 655 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 557
EMID I T+RW TK+LPRKTH+G
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -1
Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 91.9 bits (218), Expect = 1e-19
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 292 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 113
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 112 D 110
D
Sbjct: 386 D 386
Score = 77.8 bits (183), Expect = 2e-15
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = -3
Query: 594 GTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 71.7 bits (168), Expect = 1e-13
Identities = 41/93 (44%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = -2
Query: 829 RYCSV*XSLP-TLK*SCXTAXKKXHIMESNLTGYHRGQS-EWAREHLEKPIPVDSVFAQD 656
+YCSV L T A KK H+ME + G EWAREH EK + + S F Q+
Sbjct: 153 KYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQN 212
Query: 655 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHQG 557
EMID I T+RW TK+LPRKTH+G
Sbjct: 213 EMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -1
Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 279
NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 496 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 350
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 131 HGYTQEGSYSRRSCGYHNPS 72
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 379 SVDALFLITLPSFLWIPW 432
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,334
Number of Sequences: 5004
Number of extensions: 71189
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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