Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_M24
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    33   0.050
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.3  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   4.3  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   5.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   5.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.6  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   7.6  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 163 DRVDAEHITSIPPSHGRRTGGRQRNDHRFPRFSGPRARFDGAALHLPPERSGE 321
           ++ +A ++T      GRRT  ++ ND  F ++SG + R++    H+ P  S E
Sbjct: 499 EQENAANVTRSQAQEGRRTDMQKGNDREFRQYSGEQ-RYERCGFHITPCNSEE 550


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 287 PRYTFPQSGRGNAVYHHPAS-YCG 355
           P Y   +SG+G+ VY HP S  CG
Sbjct: 49  PYYFIEKSGKGSVVYFHPTSDLCG 72


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +2

Query: 173 TQSTLHPSHRPTDAGPVA------ASETTTGSLXSAGREPALMA-PRYTFPQS 310
           +Q T H +H P   GP++      +S  T G+  +A   P+L A P  + PQS
Sbjct: 293 SQPTTHDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQS 345


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 301 PPERS----GERGLPSPGFLLRVSVQSTPPL 381
           PP+ S    G  G PSP   L VS  +TPPL
Sbjct: 234 PPKTSMPPFGSAGSPSPNRSLNVSNNTTPPL 264


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 197 GMDVMCSASTLSRRFNSPDWAPARSEVGRRL*AAGVF 87
           G+ V+ +++ L  RF  P+W P R+ +   +   G+F
Sbjct: 197 GIGVIVASTCLLDRFRQPEWRPYRALIFVLMGLFGIF 233


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
 Frame = +3

Query: 195 PTVPRTPDRWPPAKRPPVPSXQRAESPL*WRRVTPSPRAVGGTRSTI-TRLPIAGERAEH 371
           PTV  T    PP  RP + S   + S +   +++P   A     + +  + PI   ++  
Sbjct: 377 PTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSANNDVMARLQPKSPIPATKSYS 436

Query: 372 A---TPRLGPSPHKTGGTP*LLGGQVADTTPVPTPCSAAAGFCVVRR 503
           A   TPR  PS  +   T  ++       T V T  + A+   V+ R
Sbjct: 437 ATIQTPR-SPSLRRADSTSHIIKVPHLPDTSVKTAKTGASEIDVLSR 482


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +3

Query: 204 PRTPDRWPPAKRPPVPSXQRAESPL*WRRVTPSPRAVGGTRSTITRLPIA--GERAEHAT 377
           P  P   PP  +P  P      +P     V P P  V      +++ P+A    R     
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKV--PPPPLSQAPVANTSSRPSSFA 222

Query: 378 PRLGPSPHKTGGTP 419
           P  G +P+ T  +P
Sbjct: 223 PPAGHAPNVTSESP 236


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
 Frame = +2

Query: 44   PPARQVGYVGVEPH*KLLPLTTGALPRTGPEPSRGY*NGETGLTQSTLHPSHRPTDAGPV 223
            P     G  G E     L   T   P TG   + G    ET +T  T   +   T+    
Sbjct: 1148 PTTGATGTAGTETQ---LTTATEVQPTTGATGTAGT---ETQVTTGTETQATTATETQAT 1201

Query: 224  AASE--TTTGSLXSAGREPALMAPRYTFPQSG 313
             A+E  TTTG+  +AG E          P +G
Sbjct: 1202 TATEVQTTTGATGTAGTETQATTATEVQPTTG 1233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,318
Number of Sequences: 5004
Number of extensions: 55866
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)