Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_M23
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    30   0.44 
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    29   0.58 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   7.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   7.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   9.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 395 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 215 TRRHS 201
            R+ +
Sbjct: 81  VRKEA 85


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 299 NGAFRHHKHRSPSSSNPSLATKGSTSELTRRHSPLSFSPDLL 174
           N + RH      SSS+ S + K STS+L R  SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 620 RHDVCKRSV--RSRSPHPLEIPSGYSITILQDSRRSAL 513
           R DV K+SV   S S  PL++  GYS+  L+D  R AL
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVH-LKDQSRDAL 97


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -2

Query: 368 PSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTRRHSPLSF 189
           PSRP   P  S  +    SS ++      +  R PS   P +++K ST  + R HSP+  
Sbjct: 253 PSRPAPTPPASSSSSPLLSSQTVKTT-TSNASRQPS---PLVSSK-STDNIIRSHSPVLL 307

Query: 188 SPDLL 174
           +P  L
Sbjct: 308 TPQTL 312


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 350 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTRRHSPLS 192
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 302 INGAFRHHKHRSPSSSNPSLATKGSTSELTRRHSPLSFSP 183
           +NG  +HH +R  +SS   L++ GS +E +  H P +  P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -2

Query: 395 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 222
           ++R  LH +  R  GKP       +YG    I   +   +   P  ++P+ +   +TS
Sbjct: 66  KTRKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEPHVTSPTKSEFATTS 123


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 331 KHVITDPPDPLTVLLGTTSTGH 266
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,902
Number of Sequences: 5004
Number of extensions: 50502
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)