Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_M23
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    29   3.3  
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15...    29   4.3  
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    29   4.3  
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314...    29   5.7  
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    28   7.5  
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    28   9.9  

>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -2

Query: 404 PSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRS 267
           P H + +    RP RPNG P     A   GS   I       +HRS
Sbjct: 59  PRHSAAFSRSLRPCRPNGPPPAFASAEFPGSVPDIAQMPPRRRHRS 104


>11_01_0022 +
           151233-151515,152632-152852,153579-153656,154558-154674,
           155970-156316,156504-157032
          Length = 524

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 554 NLKGFQVGAGCVSEHYACIR 613
           N   +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367


>06_01_0196 +
           1520015-1520191,1520483-1520527,1521851-1521910,
           1522246-1522358,1522432-1522642,1523087-1523133,
           1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 244 SDGFDEDGDRCLWCLKAP 297
           SDGFDE  D C  CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299


>03_06_0233 +
           32530174-32530492,32531081-32531127,32531277-32531413,
           32531673-32531841,32532598-32532885,32533021-32533107,
           32533454-32534152,32534244-32534735
          Length = 745

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 377 HTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 222
           H+     NG PS+  K R  GSS  ++ +F+   ++   S N +L++  +T+
Sbjct: 519 HSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSVAATT 570


>04_04_1093 +
           30825722-30826168,30826457-30826608,30826926-30827048,
           30827240-30827384,30828032-30828093,30828373-30828586,
           30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = -2

Query: 374 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSS---NPSLATKGSTSELTRRH 204
           T P  P+  PS+ P  RH   S +  G  R  +  SPS S    PS +   S S  T   
Sbjct: 5   TAPPPPSSPPSSPPPLRH---SPAALGTPRSRRRHSPSPSLALTPSSSASASASASTSSR 61

Query: 203 SPLSFSP 183
             +  SP
Sbjct: 62  PKVRPSP 68


>08_01_0539 +
           4679392-4681282,4682060-4682104,4682403-4683560,
           4683834-4684204,4684290-4684835,4684927-4685027,
           4685117-4685933,4686025-4686213,4686313-4686384,
           4686477-4686587,4686647-4686652,4686694-4686794,
           4687714-4687813,4687891-4687986,4688157-4688273,
           4688367-4688492,4688566-4688619,4688745-4688992,
           4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -2

Query: 407 EPSHRSRWKLHTRPSR-PNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKG 231
           EPS R R + +    R P   P    +  HY  +    G   HH+  +PS  + S   + 
Sbjct: 282 EPSPRDRGRHYDNRDRSPYISPRHRMRPSHYRDNTPSRGEMHHHRDNTPSRVDSS--PRR 339

Query: 230 STSELTRRHSP 198
           S  E  R  SP
Sbjct: 340 SQHEDFRDRSP 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,281,584
Number of Sequences: 37544
Number of extensions: 404137
Number of successful extensions: 953
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)