Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_M17
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    35   0.018
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   8.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +2

Query: 551  NAPPAXXLXPTDPPXXKXXPPAXPXAXLPXGPPXXEXXPWPPWXTXXLPTP 703
            +A P     PT PP     PP      +P GPP     P P      +P P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +2

Query: 560  PAXXLXPTDPPXXKXXPPAXPXAXLPXGPPXXEXXPWPPWXTXXLPTP 703
            P+    P   P     P   P A +P  PP  E  P P       P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 320 LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/67 (26%), Positives = 25/67 (37%)
 Frame = +2

Query: 449 SSPXRLXXDIXPXIXQDERLNPQXNGLFHLXVAGNAPPAXXLXPTDPPXXKXXPPAXPXA 628
           SSP  L  D+   + + ++L         L  +   PP   + PT  P     PP  P  
Sbjct: 708 SSPSPLLPDVSDTVEEQQKL---------LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIM 758

Query: 629 XLPXGPP 649
             P  PP
Sbjct: 759 GGPPPPP 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,204
Number of Sequences: 5004
Number of extensions: 19926
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)