Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_T7_M11
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    28   1.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   4.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   7.2  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    25   9.5  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.5  

>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 112 VDDFRSWRGVVLGRAGSCCDLLRLS 38
           VD FR W  +     GSC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 249 HSKRETRRRSPFGSRRSMLSVFS*HVHHGSEGPDITQFDV 130
           +S RET    PF SR+  +S  S ++  G   P I  +++
Sbjct: 527 NSFRETESPKPFLSRQIGISTLSSNISSGKGTPSIQDYEI 566


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 48  NRSQHDPALPSTTPRQERKSSTDYSEPRHRTEL 146
           NR  H P+ P+  P Q+  ++ D    R +T +
Sbjct: 252 NRLSHAPSTPNLFPNQDSSNTIDLINNRSKTSV 284


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 20  RITWRRAESQQIAARPC 70
           R+TWR  E  Q + +PC
Sbjct: 219 RVTWRLEEHMQFSCQPC 235


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 471 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 322
           CD+       + S G L H + R  GG  +  + +  N+  SK E  +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 399 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 274
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,316,275
Number of Sequences: 5004
Number of extensions: 68484
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)